View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10858_low_20 (Length: 251)
Name: NF10858_low_20
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 28561365 - 28561153
Alignment:
| Q |
37 |
atgaggtgtaaatcaaccatacctaacgcgaatgaaatagaagtgttgattgacttgcacactttagcaaactaagagtcgtttcaattttcttgtttca |
136 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28561365 |
atgaggtgcaaatcaaccatacctaacgcgaatgaaatagaagtgttgattgacttgcacactttagcaaactaagagtcgtttcaattttcttgtttca |
28561266 |
T |
|
| Q |
137 |
gagactgctctttgtgaacttcaaaaactcatcaatctcttcagtcttcatggtctttataccctttaacgtcttgctcctgctctcctcaatttttcct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28561265 |
gagactgctctttgtgaacttcaaaaactcatcaatctcttcagtcttcatggtctttataccctttaacgtcttgctcctgctctcctcaatttttcct |
28561166 |
T |
|
| Q |
237 |
ctctgctcctcctc |
250 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
28561165 |
ctct-ctcctcctc |
28561153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 23410080 - 23410129
Alignment:
| Q |
46 |
aaatcaaccatacctaacgcgaatgaaatagaagtgttgattgacttgca |
95 |
Q |
| |
|
||||||||||||| | |||||| |||||| ||||||||||||||||||| |
|
|
| T |
23410080 |
aaatcaaccatactttgcgcgaaagaaataaaagtgttgattgacttgca |
23410129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 9031648 - 9031589
Alignment:
| Q |
46 |
aaatcaaccatacctaacgcgaatgaaatagaagtgttgattgacttgcacactttagca |
105 |
Q |
| |
|
|||| |||||||| ||||| ||| ||||||||||||||||||| |||||| || |||||| |
|
|
| T |
9031648 |
aaattaaccatacttaacgtgaaggaaatagaagtgttgattggcttgcaaacattagca |
9031589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University