View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_22 (Length: 250)
Name: NF10858_low_22
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42055819 - 42056060
Alignment:
| Q |
1 |
catggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42055819 |
catggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcaca |
42055918 |
T |
|
| Q |
101 |
gattgtttctctcccagttggaaaactaatggctgcaacacttccaaccaccatatataaagttcccttcactaaatggtctttcacattgaatcctgga |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42055919 |
gattgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctgga |
42056018 |
T |
|
| Q |
201 |
ccattcaatttgaaggaacatgccctcattaccatctctgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42056019 |
ccattcaatttgaaggaacatgccctcattaccatctttgct |
42056060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42080969 - 42081205
Alignment:
| Q |
1 |
catggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42080969 |
catggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcaca |
42081068 |
T |
|
| Q |
101 |
gattgtttctctcccagttggaaaactaatggctgcaacacttccaaccaccatatataaagttcccttcactaaatggtctttcacattgaatcctgga |
200 |
Q |
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| T |
42081069 |
gattgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctgga |
42081168 |
T |
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| Q |
201 |
ccattcaatttgaaggaacatgccctcattaccatct |
237 |
Q |
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| T |
42081169 |
ccattcaatttgaaggaacatgccctcattaccatct |
42081205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42072021 - 42072262
Alignment:
| Q |
1 |
catggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcaca |
100 |
Q |
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||||| |||||||||| | | |||||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||| ||| ||||||||||||| |
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| T |
42072021 |
catgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaattctttggattcagaaccaaccctctgtctattacttctgtctcagcaca |
42072120 |
T |
|
| Q |
101 |
gattgtttctctcccagttggaaaactaatggctgcaacacttccaaccaccatatataaagttcccttcactaaatggtctttcacattgaatcctgga |
200 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42072121 |
gattattgctctcccagttggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctgga |
42072220 |
T |
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| Q |
201 |
ccattcaatttgaaggaacatgccctcattaccatctctgct |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42072221 |
ccattcaatttgaaggaacatgccctcattaccatctttgct |
42072262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 36537594 - 36537480
Alignment:
| Q |
31 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccagttggaaaactaat |
130 |
Q |
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||||||| ||| |||||||||| || || |||| |||||||||| ||| |||||| |||||||||| |||||| || | |||||| |||| ||||| || |
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| T |
36537594 |
tccttgcatttatgaaccaatttttaggatacaaaaccaaccctttgaaaatcacttctgtctcagctcagattattaccctcccacttgggaaacttat |
36537495 |
T |
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| Q |
131 |
ggctgcaacacttcc |
145 |
Q |
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||||||||||||||| |
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| T |
36537494 |
ggctgcaacacttcc |
36537480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 36531982 - 36531868
Alignment:
| Q |
31 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccagttggaaaactaat |
130 |
Q |
| |
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||||||| ||||||||||| || || || ||||||||||||||| ||| |||||| ||||||| || |||||| || | || ||| |||| ||||| || |
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| T |
36531982 |
tccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggctcagattattgccctgccacttgggaaacttat |
36531883 |
T |
|
| Q |
131 |
ggctgcaacacttcc |
145 |
Q |
| |
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||||||||||||||| |
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| T |
36531882 |
ggctgcaacacttcc |
36531868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 36525149 - 36525035
Alignment:
| Q |
31 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccagttggaaaactaat |
130 |
Q |
| |
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||||||| ||||||||||| ||||| || ||||||||||||||| ||| |||||| |||| ||||| ||||| | | |||||| |||||| || || |
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| T |
36525149 |
tccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatcatcacactcccacttggaaggcttat |
36525050 |
T |
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| Q |
131 |
ggctgcaacacttcc |
145 |
Q |
| |
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||||||||||||||| |
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| T |
36525049 |
ggctgcaacacttcc |
36525035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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