View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_24 (Length: 249)
Name: NF10858_low_24
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42997903 - 42997680
Alignment:
| Q |
1 |
tagtcaaaatcaaacatagcgtatgtcatttaaaccaccaaaaagatgaagtttaacattttcgcctaaagattgaatatctttctccttttattgaaat |
100 |
Q |
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| T |
42997903 |
tagtcaaaatcaaacatagcgtatgtcatttaaaccactaaaaagatgaagtttaatattttcgcttaaagattgaatatctttctccttttattgaaac |
42997804 |
T |
|
| Q |
101 |
-tgtgtttatttctttctttttaagttatctacactcgtgaaagccatgttatgttgaatgccttttaactacaaaatatggctattagcaattaagtca |
199 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
42997803 |
atgtgtttatttctttctttttaacttatctacactcgtgaaagctatattatgttgtatgcctttcaactacaaaatatggctattagcaattaactca |
42997704 |
T |
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| Q |
200 |
ttatcataaaattcatgaccatct |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
42997703 |
ttatcataaaattcatgaccatct |
42997680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4154854 - 4154778
Alignment:
| Q |
1 |
tagtcaaaatcaaacatagcgtatgtc-atttaaaccacca-aaaagatgaagtttaacattttcgcctaaagattg |
75 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||| |||| |||||| ||||||||| |||||||||||| |
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| T |
4154854 |
tagtcaaaatcaaacatagcatatgtcgatttaaaccaccagaaaacatgaagcttaacatttatgcctaaagattg |
4154778 |
T |
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