View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10858_low_26 (Length: 248)

Name: NF10858_low_26
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10858_low_26
NF10858_low_26
[»] chr3 (17 HSPs)
chr3 (18-240)||(44001537-44001759)
chr3 (122-172)||(4142125-4142175)
chr3 (133-170)||(997588-997625)
chr3 (133-170)||(1013978-1014015)
chr3 (135-172)||(3754610-3754647)
chr3 (135-172)||(4157948-4157985)
chr3 (135-172)||(13498234-13498271)
chr3 (122-172)||(2502158-2502208)
chr3 (122-172)||(2644353-2644403)
chr3 (122-172)||(2659143-2659193)
chr3 (135-172)||(2456259-2456296)
chr3 (139-172)||(2459285-2459318)
chr3 (135-172)||(2631367-2631404)
chr3 (135-172)||(2696736-2696773)
chr3 (171-223)||(771553-771605)
chr3 (136-172)||(803223-803259)
chr3 (122-170)||(7334230-7334278)
[»] chr5 (7 HSPs)
chr5 (135-172)||(20293005-20293042)
chr5 (135-172)||(20305866-20305903)
chr5 (135-172)||(20310270-20310307)
chr5 (135-172)||(20301453-20301490)
chr5 (135-172)||(11081823-11081860)
chr5 (135-172)||(23766866-23766903)
chr5 (135-172)||(23816714-23816751)
[»] scaffold0044 (1 HSPs)
scaffold0044 (135-172)||(89153-89190)
[»] chr4 (2 HSPs)
chr4 (135-170)||(20016189-20016224)
chr4 (135-170)||(20019776-20019811)
[»] chr6 (1 HSPs)
chr6 (135-172)||(1442112-1442149)
[»] chr2 (1 HSPs)
chr2 (135-172)||(36577376-36577413)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 44001759 - 44001537
Alignment:
Q  18 cattttggaacttgtcctctcataaaaatcaattagaaattgatcatcctcagaaatatatacaaccttggtatagggatcaaaatcatggtttcccatg 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44001759 cattttggaacttgtcctctcatataaatcaattagaaattgatcatcctcagaaatatatacaaccttggtatagggatcaaaatcatggtttcccatg 44001660  T
Q  118 gcacgaatagtgtagagtttagtccaagactctttaattccatattccttcataaaacataacaccatttgcaaagatgcacaaacaatcattaaacacc 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44001659 gcacgaatagtgtacagtttagtccaagactctttaattccatattccttcataaaacataacaccatttgcaaagatgcacaaacaatcattaaacacc 44001560  T
Q  218 cccaaggtccaagagttcttctc 240  Q
    |||||||||||||| ||||||||    
T  44001559 cccaaggtccaagacttcttctc 44001537  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 4142125 - 4142175
Alignment:
Q  122 gaatagtgtagagtttagtccaagactctttaattccatattccttcataa 172  Q
    |||||||| | | ||||||||||||||||||| ||||||||||||||||||    
T  4142125 gaatagtgaacaatttagtccaagactctttatttccatattccttcataa 4142175  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 997625 - 997588
Alignment:
Q  133 agtttagtccaagactctttaattccatattccttcat 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  997625 agtttagtccaagactctttatttccatattccttcat 997588  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 1014015 - 1013978
Alignment:
Q  133 agtttagtccaagactctttaattccatattccttcat 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  1014015 agtttagtccaagactctttatttccatattccttcat 1013978  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 3754647 - 3754610
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3754647 tttagtccaagactctttatttccatattccttcataa 3754610  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 4157948 - 4157985
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  4157948 tttagtccaagactctttatttccatattccttcataa 4157985  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 13498271 - 13498234
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13498271 tttagtccaagactctttatttccatattccttcataa 13498234  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 2502208 - 2502158
Alignment:
Q  122 gaatagtgtagagtttagtccaagactctttaattccatattccttcataa 172  Q
    |||||||||| |||||||||||| |||| ||| ||||||| ||||||||||    
T  2502208 gaatagtgtacagtttagtccaaaactccttatttccatactccttcataa 2502158  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 2644353 - 2644403
Alignment:
Q  122 gaatagtgtagagtttagtccaagactctttaattccatattccttcataa 172  Q
    |||||||||| | ||||||||||||||||| | ||||||| ||||||||||    
T  2644353 gaatagtgtacaatttagtccaagactcttgatttccatactccttcataa 2644403  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 2659143 - 2659193
Alignment:
Q  122 gaatagtgtagagtttagtccaagactctttaattccatattccttcataa 172  Q
    |||||||||| | ||||||||||||||||| | ||||||| ||||||||||    
T  2659143 gaatagtgtacaatttagtccaagactcttgatttccatactccttcataa 2659193  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 2456296 - 2456259
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  2456296 tttagtccaagagtctttatttccatattccttcataa 2456259  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 2459318 - 2459285
Alignment:
Q  139 gtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||| ||||||||||||||||||    
T  2459318 gtccaagactctttatttccatattccttcataa 2459285  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 2631404 - 2631367
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  2631404 tttagtccaagactcttgatttccatattccttcataa 2631367  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 2696736 - 2696773
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  2696736 tttaatccaagactctttatttccatattccttcataa 2696773  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 771553 - 771605
Alignment:
Q  171 aaaacataacaccatttgcaaagatgcacaaacaatcattaaacacccccaag 223  Q
    |||||||| ||| ||||||||| |||||||| ||||| || ||||||||||||    
T  771553 aaaacatatcacaatttgcaaaaatgcacaagcaatctttcaacacccccaag 771605  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 803223 - 803259
Alignment:
Q  136 ttagtccaagactctttaattccatattccttcataa 172  Q
    |||||||||||||||||| |||||||||| |||||||    
T  803223 ttagtccaagactctttatttccatattctttcataa 803259  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 7334230 - 7334278
Alignment:
Q  122 gaatagtgtagagtttagtccaagactctttaattccatattccttcat 170  Q
    |||||||||| | ||||||||||||||||||| |||| || ||||||||    
T  7334230 gaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 7334278  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 20293042 - 20293005
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20293042 tttagtccaagactctttaattccatattccttcataa 20293005  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 20305903 - 20305866
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20305903 tttagtccaagactctttaattccatattccttcataa 20305866  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 20310307 - 20310270
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20310307 tttagtccaagactctttaattccatattccttcataa 20310270  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 20301490 - 20301453
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    |||||||||||||||||||||| |||||||||||||||    
T  20301490 tttagtccaagactctttaattgcatattccttcataa 20301453  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 11081860 - 11081823
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  11081860 tttagtccaagactctttatttccatactccttcataa 11081823  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 23766866 - 23766903
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  23766866 tttagtccaagactctttatttccatattctttcataa 23766903  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 23816714 - 23816751
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  23816714 tttagtccaagactctttatttccatattctttcataa 23816751  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 89190 - 89153
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  89190 tttagtccaagactctttatttccatattccttcataa 89153  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 20016189 - 20016224
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcat 170  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20016189 tttagtccaagactcttgaattccatattccttcat 20016224  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 20019776 - 20019811
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcat 170  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20019776 tttagtccaagactcttgaattccatattccttcat 20019811  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 1442112 - 1442149
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  1442112 tttagtccaagaatctttaattccataatccttcataa 1442149  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 36577413 - 36577376
Alignment:
Q  135 tttagtccaagactctttaattccatattccttcataa 172  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  36577413 tttaatccaagactctttatttccatattccttcataa 36577376  T

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