View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_27 (Length: 242)
Name: NF10858_low_27
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 28561576 - 28561361
Alignment:
| Q |
18 |
agatattacaatatgtgggg-tctttttagctnnnnnnncggtagatgaattaaaggctacactaagaagaatgatgcatgagatgtcttgcatgccaag |
116 |
Q |
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| T |
28561576 |
agatattacaatatgtgggggtctttttagctaaaaaaacggtagatggattaaaggctacactaagaagaatgatgcatgagatgtcttgcatgccaag |
28561477 |
T |
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| Q |
117 |
atgcaggggttgtatttgaaattgtacatggttcagagaaaacat-ttttctcatcttatagtgtggagtga-cccaaaaattttgtttgacatgatttt |
214 |
Q |
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| T |
28561476 |
atgcaggggttgtatttgaaattgtacatggttcagagaaaacattttttctcatcttatagtgtggagtgatccaaaaaattttgtttgacatgatttt |
28561377 |
T |
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| Q |
215 |
tgacaacttcaatgag |
230 |
Q |
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| T |
28561376 |
tgacaacttcaatgag |
28561361 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 26381561 - 26381398
Alignment:
| Q |
57 |
ggtagatgaattaaaggctacactaagaagaatgatgcatgagatgtcttgcatgccaagatgcaggggttgtatttgaaattgtacatggttcagagaa |
156 |
Q |
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| T |
26381561 |
ggtagatggattaaagactacactaagaagattggtgcgtgtgataacttacaagctgagatgtgggcgttgtatttgagattggacatggcttggagag |
26381462 |
T |
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| Q |
157 |
aacatttttctcatcttatagtgtggagtgacccaaaaattttgtttgacatgatttttgacaa |
220 |
Q |
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| T |
26381461 |
agcgtttttctcatctaaaagtggagagcggctcaaagattttgattgacatgatttctgacaa |
26381398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 42794395 - 42794472
Alignment:
| Q |
57 |
ggtagatgaattaaaggctacactaagaagaatgatgcatgagatgtcttgcatgccaagatgcaggggttgtatttg |
134 |
Q |
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| T |
42794395 |
ggtaaatggattaaaggctacactaagaagattggagcttgtgatgtcttacatgctgagatgtgggggttgtatttg |
42794472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 54812538 - 54812461
Alignment:
| Q |
57 |
ggtagatgaattaaaggctacactaagaagaatgatgcatgagatgtcttgcatgccaagatgcaggggttgtatttg |
134 |
Q |
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| T |
54812538 |
ggtaaatggattaaaggctacactaagaagattgaagcttgtgatgccttacatgctgagatgtgggggttgtatttg |
54812461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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