View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_28 (Length: 240)
Name: NF10858_low_28
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 42055768 - 42055693
Alignment:
| Q |
1 |
agtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatcagcacaaactctaacattagatt |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42055768 |
agtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatcagcacaaactctaacattagatt |
42055693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 42080918 - 42080843
Alignment:
| Q |
1 |
agtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatcagcacaaactctaacattagatt |
76 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42080918 |
agtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatcaacacaaactctaacattagatt |
42080843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42071970 - 42071917
Alignment:
| Q |
1 |
agtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatca |
54 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42071970 |
agtctgacttgctctataggagaatcatccacttctgtgtcatcatctgcatca |
42071917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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