View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_3 (Length: 483)
Name: NF10858_low_3
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 133 - 473
Target Start/End: Original strand, 47459842 - 47460182
Alignment:
| Q |
133 |
tttgaaggtgtatattaatgttgccgattcacgttatggcaaaacggtatgggtgcatcaaccaacgaggagttaatggatttggaaaattgggaggcgt |
232 |
Q |
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| T |
47459842 |
tttgaaggtgtatattaatgttgccgattcacgttatggcaaaacggtatgggtgtatcaaccaacgaggagttaatagatttggaaaattggaaggcgt |
47459941 |
T |
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| Q |
233 |
tgataactaaagttatctccttgactaagaagttaattactattctctctatgcgccccttcaaattaaaaacggcatcttctctttcacgcatcttcat |
332 |
Q |
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| T |
47459942 |
tgataactaaagttatctccttgactaagaagttaattactattctctatatgcgccccttcaaattaaaaacggcatcttctctttcacgcatcttcat |
47460041 |
T |
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| Q |
333 |
cttctctttcacgctccacgttacaaaatcgttcgttccttaaaaacaagaaatgtgaagcatagacacaaacaacaatggcacaacaacaatcatcctc |
432 |
Q |
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| T |
47460042 |
cttctctttcacgctccacgttacaaaatcgttcgttccttaaaaacaagaaatgtgaagcatagacacaaacaacaatggcacaacaacaatcatcctc |
47460141 |
T |
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| Q |
433 |
attccttggtcctgacaccgttgacgacttttacttctctg |
473 |
Q |
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| T |
47460142 |
attccttggtcctgacaccgtagacgacttttacttctctg |
47460182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 47459771 - 47459857
Alignment:
| Q |
25 |
ttatcatgtctgtcctactgtgcaacaaattaatttataaaattaaatattcaaacaaaacgatactccaatttgaaggtgtatatt |
111 |
Q |
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| T |
47459771 |
ttatcatatctgtcctactgtacaacaaattaatttataaaattaaatattcaaacaaaacgatactccaatttgaaggtgtatatt |
47459857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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