View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_30 (Length: 238)
Name: NF10858_low_30
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42997974 - 42998074
Alignment:
| Q |
1 |
tcttcattcttgtattggataacttcataactttatgtcttcttaaacacatcttgtgttggagacattttggtttgataatataattcattttaacatt |
100 |
Q |
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| T |
42997974 |
tcttcattcttgtattggataacttcataactttatgtcttcttaaacacatcttgtgttggagacattttggtttgataatataattcattttagcatt |
42998073 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
42998074 |
t |
42998074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 42998144 - 42998197
Alignment:
| Q |
170 |
taccacttgtattacaccatatacgtagacatagccacatacaattcccatctg |
223 |
Q |
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| T |
42998144 |
taccacttatattacaccatatacgtagacatagccacatacaattcccatctg |
42998197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 4154965 - 4155022
Alignment:
| Q |
36 |
tgtcttcttaaacacatcttgtgttggagacattttggtttgataatataattcattt |
93 |
Q |
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| T |
4154965 |
tgtcttctgaaacacatcttgtagcgaagaccttttggtttgctaatataattcattt |
4155022 |
T |
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