View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_34 (Length: 223)
Name: NF10858_low_34
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_34 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 895409 - 895198
Alignment:
| Q |
1 |
agacttcattcttcttcctcaagtaaaaaatattcaacaaagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaa |
100 |
Q |
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| T |
895409 |
agacttcattcttcttcctcaagtaaaaaatattcaacaaagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaa |
895310 |
T |
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| Q |
101 |
caagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgt |
200 |
Q |
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| T |
895309 |
caagaagttaaatcactcatttccaaaactaaccttgtttctttaatcttcagtatattttcaacagatgcatatgaagttgccaaacaatttaacttgt |
895210 |
T |
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| Q |
201 |
cttcttaccttt |
212 |
Q |
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|||||||||||| |
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| T |
895209 |
cttcttaccttt |
895198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 905283 - 905445
Alignment:
| Q |
50 |
cctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatct |
149 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
905283 |
cctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatcactcatttccaaaactaaccttgtttctttaatct |
905382 |
T |
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| Q |
150 |
tcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttt |
212 |
Q |
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| T |
905383 |
ttggtctattctcaaccgatgcacatgaagttgctaaacaattcaatttatcttcttaccttt |
905445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 8295307 - 8295157
Alignment:
| Q |
46 |
tgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttcttta |
145 |
Q |
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|||||||||| |||| ||||||||||| |||||||| ||||||||||||||| | ||||||| ||||||||| |||| |||||| ||| ||| ||||| |
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| T |
8295307 |
tgatcctgcaacacagatgaaactcatagtgaaacactctattccatttctttatgaagaagtaaaatcactcctttcaaaaactcgcctagttgcttta |
8295208 |
T |
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| Q |
146 |
atcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaac |
196 |
Q |
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| T |
8295207 |
gttttcagcatgttttcaaccgatgcacatgatgttgcgaaacatttcaac |
8295157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 33256459 - 33256598
Alignment:
| Q |
57 |
cacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtat |
156 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| |||| |||||| |||||||| ||||| | | ||| || |
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| T |
33256459 |
cacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttcaaaaactaaccttgttgctttagtttgcagcat |
33256558 |
T |
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| Q |
157 |
attttcaacagatgcatatgaagttgctaaacaattcaac |
196 |
Q |
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|||||||| |||||| | || || |||||||| |||||| |
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| T |
33256559 |
gttttcaaccgatgcacacgatgtagctaaacatttcaac |
33256598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 577 - 716
Alignment:
| Q |
57 |
cacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtat |
156 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| |||| |||||| |||||||| ||||| | | ||| || |
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| T |
577 |
cacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttcaaaaactaaccttgttgctttagtttgcagcat |
676 |
T |
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| Q |
157 |
attttcaacagatgcatatgaagttgctaaacaattcaac |
196 |
Q |
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|||||||| |||||| | || || |||||||| |||||| |
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| T |
677 |
gttttcaaccgatgcacacgatgtagctaaacatttcaac |
716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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