View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_36 (Length: 220)
Name: NF10858_low_36
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27294837 - 27295038
Alignment:
| Q |
1 |
agctgtacgttggattctcgatggaattgagatatattattatcgacaaaggagcattgcattatctgaaaaagcttcagttaggctcaattccccgatt |
100 |
Q |
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| T |
27294837 |
agctgtacgttggattctcgatggaattgagatatattattatcgacgaaggagcattgccttatctgaaaaagcttcagttaggctcaattccccgact |
27294936 |
T |
|
| Q |
101 |
tgagaatataccgactggcatccaacacatagagaagcttgaagttcttcatatttggcttatgcctattgaatctgtgcagcgcatctataccgagtat |
200 |
Q |
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| T |
27294937 |
tgagaatgtaccgactggcatccaacacatagagaagcttgaagttcttcatatttggcttatgcctattgaatctgtgcagcgcatctataccgagtat |
27295036 |
T |
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| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
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| T |
27295037 |
tg |
27295038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 22036562 - 22036603
Alignment:
| Q |
103 |
agaatataccgactggcatccaacacatagagaagcttgaag |
144 |
Q |
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| T |
22036562 |
agaatatacccactggcatccaacacttggagaagcttgaag |
22036603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 22117130 - 22117171
Alignment:
| Q |
103 |
agaatataccgactggcatccaacacatagagaagcttgaag |
144 |
Q |
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| T |
22117130 |
agaatatacccactggcatccaacacttggagaagcttgaag |
22117171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 21947672 - 21947712
Alignment:
| Q |
103 |
agaatataccgactggcatccaacacatagagaagcttgaa |
143 |
Q |
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| T |
21947672 |
agaatatacccactggcatccaacacttggagaagcttgaa |
21947712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 22106756 - 22106796
Alignment:
| Q |
103 |
agaatataccgactggcatccaacacatagagaagcttgaa |
143 |
Q |
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|||||||||| ||||||||||||||| | |||||||||||| |
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| T |
22106756 |
agaatatacccactggcatccaacacttggagaagcttgaa |
22106796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 22613672 - 22613608
Alignment:
| Q |
117 |
ggcatccaacacatagagaagcttgaagttcttcatatttggcttatgcctattgaatctgtgca |
181 |
Q |
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|||||||||||| ||||||||||| ||||||| |||||||| |||||| | ||||| |||||| |
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| T |
22613672 |
ggcatccaacacttagagaagcttaaagttctcaatatttgggatatgccaactgaatttgtgca |
22613608 |
T |
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