View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_39 (Length: 208)
Name: NF10858_low_39
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 1196805 - 1196651
Alignment:
| Q |
43 |
ttggtaatactgtattacctcaacaccacattcacaagccaatttcaaccaaatatcaacatcctttgacatgtactttggtacaaaaccgtttaaatgg |
142 |
Q |
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| T |
1196805 |
ttgggaatactctattacctcaacaccacattcacaagccaatttcaaccaaatatcaacatcctttgacatgtacttaggtacaaaaccgtttaaatcg |
1196706 |
T |
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| Q |
143 |
atcttaaattctttgataggcaaactttggtcacgaaacattagcattcttctct |
197 |
Q |
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| T |
1196705 |
atcttaaattctttgataggcaaactttggtcacgaaacattagcattcttctct |
1196651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 1180487 - 1180309
Alignment:
| Q |
19 |
ttgctccttaccttccagtacctgttggtaatactgtattacctcaacaccacattcacaagccaatttcaaccaaatatcaacatcctttgacatgtac |
118 |
Q |
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| T |
1180487 |
ttgctcctgaccttccagtatctgttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaattatcaacatcctttgacatgtac |
1180388 |
T |
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| Q |
119 |
tttggtacaaaaccgtttaaatggatcttaaattctttgataggcaaactttggtcacgaaacattagcattcttctct |
197 |
Q |
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| T |
1180387 |
ctaactacaaaaccattcaaattgagcctaaattttttgatagccaaactttggtcacgaaacattagcattcttctct |
1180309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 5176957 - 5176893
Alignment:
| Q |
53 |
tgtattacctcaacaccacattcacaagccaatttcaaccaaatatcaacatcctttgacatgta |
117 |
Q |
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| T |
5176957 |
tgtattccttcaacaccacattcacttgctaacttcaaccaaagatcaatatcctttaacatgta |
5176893 |
T |
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