View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_4 (Length: 471)
Name: NF10858_low_4
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 102 - 453
Target Start/End: Original strand, 31406263 - 31406614
Alignment:
| Q |
102 |
tgggaggattgggggaattctgtccccttaatagtattcccttttcattaaaaaacaatcataaatattagtggaggagaaagaaatgcaaggagttggc |
201 |
Q |
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| T |
31406263 |
tgggaggattgggggaattctgtccccttaatagtattcccttttcattaaaaaacaatcataaatattagtggaggagaaagaaatgcaaggagttggc |
31406362 |
T |
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| Q |
202 |
aaacacattcattcatattaatgacaaaaaagctcatagagagtcacatcaacctgcccataatagtgactaacaaacaacaaagacaaagttttatttc |
301 |
Q |
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| T |
31406363 |
aaacacattcattcatattaatgacaaaaaagctcatacagagtcacatcaacctgcccataatcactactaacaaacaacaaagacaaagttttatttc |
31406462 |
T |
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| Q |
302 |
tggctactagcacttcgatactattaactaaatagttaatatggtaacaataattaagcttctgcaatatcagcagaatcagcagcagctaggacaagct |
401 |
Q |
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| T |
31406463 |
tggttactagcacttcgatactattaactaaatagttaatatggtaacaataattaagcttctgcaatatcagcagaatcagcagcagctaggacaagct |
31406562 |
T |
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| Q |
402 |
cagggtgaatatttcttgcatgatccacaacatttggaagtcccagtgctct |
453 |
Q |
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| T |
31406563 |
cagggtgaatatttcctgcatgatccacagcatttggaagtcccagtgctct |
31406614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 31405803 - 31405891
Alignment:
| Q |
16 |
cacagaccaaatgtgaaggccttgatcaagtgctagtatagaggaaaatagtaggaaaccctatctaagatgcagaaatatccagttgg |
104 |
Q |
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| T |
31405803 |
cacagaccaaatgtgaaggccttgatcaagtgctagtatagaggaaaatagtaggaaaccctatctaagatgcagaaatatccagttgg |
31405891 |
T |
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