View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_6 (Length: 429)
Name: NF10858_low_6
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 9520692 - 9520584
Alignment:
| Q |
211 |
tgtgaaaatattgtaaactattttttgttcttaagtttgaagggtcgtggtttaaaagcttaaaccaatagactcaaaatcctcaccgcttataaacaat |
310 |
Q |
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| T |
9520692 |
tgtgaaaatattgtaaacaattttgttttcttaagtttgaagggtcgtggtctaaaagcttaaaccaatagactcaaaatcctcactacttataaacaat |
9520593 |
T |
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| Q |
311 |
ttaaacctc |
319 |
Q |
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| T |
9520592 |
ttaaacctc |
9520584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 9520958 - 9520873
Alignment:
| Q |
18 |
gcaatatcattgattccctccacctggtgctaagggaacctggttcaccccaatattttcatgcaacttcattacccagctccaag |
103 |
Q |
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| T |
9520958 |
gcaatatcattgattcccaccacctggtactaagggaacctggttcaccccaatattttcatgcaacttcattacccaactccaag |
9520873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 9520803 - 9520751
Alignment:
| Q |
160 |
tacctccgtataaaggtaattgaaatttatccaaaattgtaattgaatatttg |
212 |
Q |
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| T |
9520803 |
tacctccgtataaaggtaattgaaatttatccaaaattataattgagtatttg |
9520751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 9520467 - 9520426
Alignment:
| Q |
381 |
cacacaatttctttcttcaaaagtttagaatctcctttgctt |
422 |
Q |
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| T |
9520467 |
cacacaatttctttcttcaaaagtttagtatctccttagctt |
9520426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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