View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10858_low_8 (Length: 387)
Name: NF10858_low_8
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 3702556 - 3702907
Alignment:
| Q |
18 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgtcgtgttttgcataacatttgtgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3702556 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgag |
3702655 |
T |
|
| Q |
118 |
atgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaaggcta |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702656 |
atgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaaggcta |
3702755 |
T |
|
| Q |
218 |
gagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaacttataagattaagaactttgtgttatttgttgtattttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702756 |
gagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaacttataagattaagaactttgtgttatttgttgtattttg |
3702855 |
T |
|
| Q |
318 |
atcattgttatatgcatctctgagaacatgattttattttttgctgtttgtt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702856 |
atcattgttatatgcatctctgagaacatgattttattttttgctgtttgtt |
3702907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 3698868 - 3699216
Alignment:
| Q |
18 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgtcgtgttttgcataacatttgtgag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3698868 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtgag |
3698967 |
T |
|
| Q |
118 |
atgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaaggcta |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698968 |
atgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaaggcta |
3699067 |
T |
|
| Q |
218 |
gagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaacttataagattaagaactttgtgttatttgttgtattttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3699068 |
gagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaactcataagattaagaactttgtgtaatttgttgtattttg |
3699167 |
T |
|
| Q |
318 |
atcattgttatatgcatctctgagaacatgattttattttttgctgttt |
366 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3699168 |
atcattgttttatgcatctctgagaacatgattttcttttttgctgttt |
3699216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 52250868 - 52250765
Alignment:
| Q |
18 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgtcgtgttttgcataacatttgtgag |
117 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
52250868 |
gaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaa |
52250769 |
T |
|
| Q |
118 |
atga |
121 |
Q |
| |
|
|||| |
|
|
| T |
52250768 |
atga |
52250765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 17602793 - 17602894
Alignment:
| Q |
18 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgtcgtgttttgcataacatttgtgag |
117 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||| | |||||||| ||||||| ||| |||||||| |||| | ||||| ||||||||| |
|
|
| T |
17602793 |
gaaaggtaggtgggggtgtttgaagaaaaggactgaaattaagttgcaagatttacctgttgttcttggtgcttgttgtgtgcttcataatatttgtgag |
17602892 |
T |
|
| Q |
118 |
at |
119 |
Q |
| |
|
|| |
|
|
| T |
17602893 |
at |
17602894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 39718869 - 39718924
Alignment:
| Q |
127 |
gagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctga |
182 |
Q |
| |
|
|||||||||||||||||||||| | ||||| || | |||||||||||| ||||||| |
|
|
| T |
39718869 |
gagaaaatggatcctgaacttaagattgatgttttggatgatgaaatgcttcctga |
39718924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University