View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_9 (Length: 371)
Name: NF10858_low_9
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 12106426 - 12106295
Alignment:
| Q |
21 |
atatatatatgaaagtttcgttgaaaaattccagtatagtttatgtgtttgttaaatagggtaaaatcatccgttgttttatcattcaacaaaatcaaaa |
120 |
Q |
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| T |
12106426 |
atatatatatgaaagtttcgtagaaaaattccagtataatttatgtgtttgttaaatagggtaaaatcatctgttgttttatcattcaacaaaatcaaaa |
12106327 |
T |
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| Q |
121 |
tttcttaggaatttaaacaggagtttaatact |
152 |
Q |
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| T |
12106326 |
tttcttaggaatttaaacaggagtttaatact |
12106295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 12106262 - 12106120
Alignment:
| Q |
151 |
ctggattaaatgtaacacagatggagctgctaactccatgtcatcctcatgtggaggtctctttagaaatcacaatgctgactttttatgttgctttgtt |
250 |
Q |
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| T |
12106262 |
ctggattaaatgtaacacaaatggagctgctacctccatgtcatcctcatgtagaggtctctttagaaatcacaatgctgactttttatgttgctttgtt |
12106163 |
T |
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| Q |
251 |
gaacaattgaatggtgtgaatgc-tctcaatgctgagctaaat |
292 |
Q |
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| T |
12106162 |
gaacaattgaatggtgtgaatgcatcttattgctgagctaaat |
12106120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 12105974 - 12105898
Alignment:
| Q |
290 |
aatggagctttgagagaaattgaaatagctgctcaatatcaatggagaaatctt--aattgagacggattcatctca |
364 |
Q |
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| T |
12105974 |
aatggagctttgagagaaattgaaatagctgctcaatatcaatgaagaaatctttggattgagacggattcatctca |
12105898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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