View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10859_high_3 (Length: 260)
Name: NF10859_high_3
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 34215714 - 34215481
Alignment:
| Q |
19 |
ctgtcatgtccgaaggtaatagcatgctcacacaaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34215714 |
ctgtcatgtccgaaggtaatagcatgctcacgcaaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaat |
34215615 |
T |
|
| Q |
119 |
tcgggagtacgatcaaaaggcagcggaagatccattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34215614 |
tcgggagtacgatcaaaaggcagcggaagatccattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccg |
34215515 |
T |
|
| Q |
219 |
ccgtatagaacctgctcaaggggtgcttcatctc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34215514 |
ccgtatagaacctgctcaaggggtgcttcatctc |
34215481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 11213027 - 11213256
Alignment:
| Q |
19 |
ctgtcatgtccgaaggtaatagcatgctcacacaaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||| | || |||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
11213027 |
ctgtcatgtccgaaggcaatagcatgctcatg-aaagtgaaattttagttcatcagagcaacccaaatattcaacgtgatatggaattgtggaatagaat |
11213125 |
T |
|
| Q |
119 |
tcgggagtacgatcaaaaggcagcggaagatccattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||| | ||||| |||||||||||||| | |
|
|
| T |
11213126 |
tcgggagtacgatcaaaaggcagcgggagatccaatcacaccggttttatccaagaagcaaaaacagaaatt---gcgacaacgtgtccttgggaaactg |
11213222 |
T |
|
| Q |
219 |
ccgtatagaacctgctcaaggggtgcttcatctc |
252 |
Q |
| |
|
| |||||||||| | |||||||||| |||||||| |
|
|
| T |
11213223 |
cggtatagaacccgttcaaggggtgattcatctc |
11213256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 35222538 - 35222711
Alignment:
| Q |
79 |
acccaaatattcaacgtgatatggaattatggaatcgaattcgggagtacgatcaaaaggcagcggaagatccattcacaccggttttgtccaagaagca |
178 |
Q |
| |
|
||||||||||| || |||||||||||| || ||| ||||||| |||||||||||||||| | |||||||||||| || | ||||||||||||||||| |
|
|
| T |
35222538 |
acccaaatatttgacatgatatggaattgtgaaatagaattcgagagtacgatcaaaagggaaaggaagatccatttactcttgttttgtccaagaagca |
35222637 |
T |
|
| Q |
179 |
aaaactgaaattcagacaacaacatgtccttgggaaaccgccgtatagaacctgctcaaggggtgcttcatctc |
252 |
Q |
| |
|
||||| |||||| | |||||||| | |||||||| ||||| ||| ||||| |||||||||||| ||||||| |
|
|
| T |
35222638 |
aaaacagaaattgcggcaacaacaaattcttgggaagccgccatattgaacccgctcaaggggtgactcatctc |
35222711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 18485355 - 18485412
Alignment:
| Q |
19 |
ctgtcatgtccgaaggtaatagcatgctcacacaaagtgaaattttagttcattacag |
76 |
Q |
| |
|
||||||||| |||||| |||||||||||||| || || ||||||||||||||| |||| |
|
|
| T |
18485355 |
ctgtcatgttcgaaggcaatagcatgctcacgcatagagaaattttagttcatcacag |
18485412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 3568983 - 3569166
Alignment:
| Q |
51 |
caaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaattcgggagtacgatcaaaaggcagcggaagatc |
150 |
Q |
| |
|
|||||||||||| ||||| || ||| |||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3568983 |
caaagtgaaattatagtttatcacaacaacccaaatattcaacgtgatatggaagt--ggcatagaattcgggagtacgatcaaaaggcagtggaagatc |
3569080 |
T |
|
| Q |
151 |
cattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccgccgtatagaacctgctca |
236 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||| |||||||| | |||||| |||||||||||||||||||| ||||| |
|
|
| T |
3569081 |
tattcacgctggttttgtccaagaagcaaaaacagaaattacgacaacaagaagtccttaggaaaccgccgtatagaacccgctca |
3569166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 17368039 - 17368129
Alignment:
| Q |
153 |
ttcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccgccgtatagaacctgctcaaggggtg |
243 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
17368039 |
ttcactccggttttgtccaagaagcaaaaacagaaattgcgacaacaacatgtccttgggaaaccgccgtataaaacccgctcaaagggtg |
17368129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University