View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10859_high_9 (Length: 228)

Name: NF10859_high_9
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10859_high_9
NF10859_high_9
[»] chr1 (2 HSPs)
chr1 (1-228)||(2068214-2068441)
chr1 (187-228)||(40847537-40847578)
[»] chr5 (13 HSPs)
chr5 (1-101)||(34649006-34649106)
chr5 (1-101)||(34678449-34678549)
chr5 (1-96)||(34685615-34685713)
chr5 (1-96)||(18270591-18270689)
chr5 (1-96)||(34430690-34430788)
chr5 (3-94)||(34422417-34422511)
chr5 (174-228)||(34422276-34422330)
chr5 (1-96)||(27842640-27842738)
chr5 (175-228)||(34430548-34430601)
chr5 (174-226)||(34685805-34685857)
chr5 (182-228)||(18270770-18270816)
chr5 (183-225)||(34649196-34649238)
chr5 (188-226)||(34678670-34678708)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2068441 - 2068214
Alignment:
Q  1 gtttcacagagaaacaagaggctttagtgaatagctcatgggaatcatttaaacaaaaccctggtaatagtgttttgttctacactatgtaagtttgata 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2068441 gttttacagagaaacaagaggctttagtgaatagctcatgggaattatttaaacaaaaccctggtaatagtgttttgttctacactatgtaagtttgata 2068342  T
Q  101 tannnnnnngtgtttgtgttttcactttccgttaattgtcagtttgaaagagattgtgtaagttaaagaataatttggttattttgattaaaatagtata 200  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2068341 tatttttttgtgtttgtgttttcactttccgttaattgtcagtttgaaagagattgtgtaagttaaagaataatttggttattttgattgaaatagtata 2068242  T
Q  201 ttggagaaagcccctgcagcaaagggca 228  Q
    ||||||||||||||||||||||||||||    
T  2068241 ttggagaaagcccctgcagcaaagggca 2068214  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 40847578 - 40847537
Alignment:
Q  187 attaaaatagtatattggagaaagcccctgcagcaaagggca 228  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  40847578 attaaaatagtatattggataaagcacctgcagcaaaaggca 40847537  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34649006 - 34649106
Alignment:
Q  1 gtttcacagagaaacaagaggctttagtgaatagctcatgggaatcatttaaacaaaaccctggtaatagtgttttgttctacactatgtaagtttgata 100  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  34649006 gtttcaccgagaaacaagaggctttagtgaatagttcttgggaatcacttaaacaaaaccctggttatagtgttttgttctacactatgtacgtttgata 34649105  T
Q  101 t 101  Q
    |    
T  34649106 t 34649106  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34678449 - 34678549
Alignment:
Q  1 gtttcacagagaaacaagaggctttagtgaatagctcatgggaatcatttaaacaaaaccctggtaatagtgttttgttctacactatgtaagtttgata 100  Q
    ||||||| |||||||||||||||||||| ||||||||||  ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  34678449 gtttcaccgagaaacaagaggctttagtaaatagctcattcgaatcatttaaacaaaatcctggttatagtgttttgttctacactatgtaagtttgata 34678548  T
Q  101 t 101  Q
    |    
T  34678549 t 34678549  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 34685615 - 34685713
Alignment:
Q  1 gtttcacagagaaacaagaggctttagtgaatagctcatgggaatcatttaaacaaaac---cctggtaatagtgttttgttctacactatgtaagttt 96  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||   |||||  |||||||||| |||||||||| ||||||||    
T  34685615 gtttcacagagaatcaagaggctttagtgaatagctcatgggaatcattcaaacaaaaccttcctggctatagtgttttcttctacactacgtaagttt 34685713  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 18270591 - 18270689
Alignment:
Q  1 gtttcacagagaaacaagaggctttagtgaatagctcatgggaatcatttaaacaaaaccctggta---atagtgttttgttctacactatgtaagttt 96  Q
    ||||||| || || |||||||||||||| ||||||||||||||| ||||||||||||||| |  ||   | ||||||||||||||||||||||||||||    
T  18270591 gtttcaccgaaaaccaagaggctttagttaatagctcatgggaagcatttaaacaaaaccttcctaaatacagtgttttgttctacactatgtaagttt 18270689  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34430788 - 34430690
Alignment:
Q  1 gtttcacagagaaacaagaggctttagtgaatagctcatgggaatcatttaaacaaaa---ccctggtaatagtgttttgttctacactatgtaagttt 96  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||||||||| ||||||||   | ||||  |||||||||||||||| |||||||||||||    
T  34430788 gtttcaccgagaagcaagagtctttagtgaatagttcatgggaatcattcaaacaaaatctctctggctatagtgttttgttctatactatgtaagttt 34430690  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 34422511 - 34422417
Alignment:
Q  3 ttcacagagaaacaagaggctttagtgaatagctcatgggaatcatttaaacaaaa---ccctggtaatagtgttttgttctacactatgtaagt 94  Q
    ||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||    || ||  ||||||| ||||||||||||||||||||    
T  34422511 ttcactgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagt 34422417  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 34422330 - 34422276
Alignment:
Q  174 tttggttattttgattaaaatagtatattggagaaagcccctgcagcaaagggca 228  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  34422330 tttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggca 34422276  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 27842738 - 27842640
Alignment:
Q  1 gtttcacagagaaacaagaggctttagtgaatagctcatgggaatcatttaaacaaaacc---ctggtaatagtgttttgttctacactatgtaagttt 96  Q
    ||||||| || ||||| ||||||||||| ||||||||||  ||  |||| ||||||||||   ||||| |||||||||| ||||||||| |||||||||    
T  27842738 gtttcactgataaacaggaggctttagtcaatagctcatatgaggcattcaaacaaaacctttctggttatagtgtttttttctacactgtgtaagttt 27842640  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 34430601 - 34430548
Alignment:
Q  175 ttggttattttgattaaaatagtatattggagaaagcccctgcagcaaagggca 228  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||| ||||    
T  34430601 ttggttgttttgataaaaatagtatattagagaaagcacctgcagcaaaaggca 34430548  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 34685805 - 34685857
Alignment:
Q  174 tttggttattttgattaaaatagtatattggagaaagcccctgcagcaaaggg 226  Q
    |||||||  ||| |||||||||||||||| |||||||| ||||||||||||||    
T  34685805 tttggttgctttaattaaaatagtatattagagaaagcacctgcagcaaaggg 34685857  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 18270770 - 18270816
Alignment:
Q  182 ttttgattaaaatagtatattggagaaagcccctgcagcaaagggca 228  Q
    |||| |||||||||||||||| || ||||| ||||||||||||||||    
T  18270770 tttttattaaaatagtatattagacaaagcacctgcagcaaagggca 18270816  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 34649196 - 34649238
Alignment:
Q  183 tttgattaaaatagtatattggagaaagcccctgcagcaaagg 225  Q
    |||||||||||||||||||| |||||||| |||||| ||||||    
T  34649196 tttgattaaaatagtatatttgagaaagcacctgcaacaaagg 34649238  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 34678670 - 34678708
Alignment:
Q  188 ttaaaatagtatattggagaaagcccctgcagcaaaggg 226  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  34678670 ttaaaacagtatattggagaaagcacctgcagcaaaggg 34678708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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