View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_1 (Length: 654)
Name: NF10859_low_1
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 25 - 622
Target Start/End: Complemental strand, 10224303 - 10223706
Alignment:
| Q |
25 |
atgcaattcaaccagactacaatactttcgagatcaaatggatcgacaaattgattggttcacggttattaattcaatcgttcttttaaaacattgataa |
124 |
Q |
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| T |
10224303 |
atgcgattcaacgagactacaatactttcgaaatcaactggatcgacaaattgactggttcacggttattagttaaatcgtattttttaaacattgatta |
10224204 |
T |
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| Q |
125 |
atctcaatattgtagcagtgaatatatgatatatctaatattgat--atacttttgtatttgttgcagatggaagtatacaagatggtcaagagaaacgt |
222 |
Q |
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| T |
10224203 |
atcccagtatagtttccaagatcagtgaatatatctaat-tagatctatacttttgtatttgttgcagatggaagtatacaagatggtcaagagaaacgt |
10224105 |
T |
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| Q |
223 |
atgttttgctcctcaactacaagattagctcttaattacaacatatccaattcttgttttgcagtccaaattactaacttgttctatttttgtgcacata |
322 |
Q |
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| T |
10224104 |
atgttttgctcctcaactacaagattagctcttaattacaacatatccaattcttgtttcgcagtcctaattactaacttgttctatttttgtgcacata |
10224005 |
T |
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| Q |
323 |
ttgcttattaggacaagatcttggaagaagagaatagggaacttaattttatcctccaggtacagctttgagacattgctcannnnnnnngagaaacatt |
422 |
Q |
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| T |
10224004 |
ttgcttattaggacaagatcttgaaagaagagaatagggaacttaattttatcctccaggtacagctttgagacattactcttttttttttacaaacat- |
10223906 |
T |
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| Q |
423 |
atatatatatgtacatattaattttgattgnnnnnnntgtatattaaaatgtttttgtggtattgttttcactcttcagcagcagcaa-cgtatggtagt |
521 |
Q |
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| T |
10223905 |
-tatatatatgtacatattaattttgattgaaaaaaatgtatattaaaatgtttttgtggtattgttttcacttttcagcagcaacaagggtatggcagt |
10223807 |
T |
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| Q |
522 |
ggaaggtgggagagaaatggattataatgatgaatttgatgagagtagtggaagttatttcaattcccagatgccattttcatttcgtgttcagcctatg |
621 |
Q |
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| T |
10223806 |
ggaaggtgggagataaatggattataatgatgaatttgatgagagtactggaagttatttcaattcccagatgccattttcctttcgtgttcagcctatg |
10223707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 497 - 622
Target Start/End: Complemental strand, 10228728 - 10228611
Alignment:
| Q |
497 |
ttcagcagcagcaacgtatggtagtggaaggtgggagagaaatggattataatgatgaatttgatgagagtagtggaagttatttcaattcccagatgcc |
596 |
Q |
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| T |
10228728 |
ttcagcagcatcaacgcatggcagtggaaggtgggagagaaacggat---aatgatcaatttgatgagagt---ggaag--atttcaattcccagatgcc |
10228637 |
T |
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| Q |
597 |
attttcatttcgtgttcagcctatgc |
622 |
Q |
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| T |
10228636 |
attttcatttcgtgttcaacctatgc |
10228611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 10230126 - 10230072
Alignment:
| Q |
170 |
atacttttgtatttgttgcagatggaagtatacaagatggtcaagagaaacgtat |
224 |
Q |
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| T |
10230126 |
atacttgtggatttgttgcagatgaaagtatacaggatggtaaggagaaacgtat |
10230072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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