View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_10 (Length: 286)
Name: NF10859_low_10
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 8973653 - 8973386
Alignment:
| Q |
1 |
accatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgttagttagatttggatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973653 |
accatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgttagttagatttggatat |
8973554 |
T |
|
| Q |
101 |
tttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattgttggtattttcaaattgacataattgccctttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973553 |
tttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattgttggtattttcaaattgacataattgccctttcc |
8973454 |
T |
|
| Q |
201 |
attttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaacaccggtatca |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973453 |
attttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaacaccggtatca |
8973386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 104 - 268
Target Start/End: Complemental strand, 8962148 - 8961984
Alignment:
| Q |
104 |
gccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattgttggtattttcaaattgacataattgccctttccatt |
203 |
Q |
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||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8962148 |
gccaagaaccctttgttgaagaatcttgctccaatgagttttttgttgcaaaaagatgaattgttggtattttcaaattgacataatttccctttccatt |
8962049 |
T |
|
| Q |
204 |
ttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaacaccggtatca |
268 |
Q |
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| T |
8962048 |
ttgaaggaattttagtaaatccattatcattgaaactttcactttctggccaaacaccggtatca |
8961984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 8946842 - 8947102
Alignment:
| Q |
1 |
accatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgttagttagatttggatat |
100 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||| | ||||| ||||| || | | || | || | |
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| T |
8946842 |
accatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaatgttcgaattt |
8946941 |
T |
|
| Q |
101 |
tttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattgttggtattttcaaattgacataattgccctttcc |
200 |
Q |
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|| || | |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
8946942 |
ttcgcagataaccctttattgaagaatcttgctccaatgagtttcttgttgcaaaatgatgaattgttgctattttcaaattgacataacttccctttcc |
8947041 |
T |
|
| Q |
201 |
attttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaacacc |
261 |
Q |
| |
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|||||||||| |||| || ||| ||||||| || ||||||||||| || ||||||||||| |
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|
| T |
8947042 |
attttgaagggattttagtcattccattatcattaaaactttcactctcgggccaaacacc |
8947102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 8957233 - 8957087
Alignment:
| Q |
17 |
ccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgttagttagatttggatattttgccaaaaaccctt |
116 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| || ||||| |||||||| ||| | | |||| ||||||||||| | || |||| |
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| T |
8957233 |
ccagctgctgttgatgaagtgtgagtcccatgaccatgtgaatcacgagtggagtttaaacctaag---gttatgtttggatatttggattgcaatcctt |
8957137 |
T |
|
| Q |
117 |
tgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattg |
166 |
Q |
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||||||||||| | || |||||||||||||||||||||| |||||||||| |
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| T |
8957136 |
tgttgaagaatttggcaccaatgagtttcttgttgcaaagagatgaattg |
8957087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8962251 - 8962178
Alignment:
| Q |
1 |
accatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttca |
74 |
Q |
| |
|
||||| ||| |||||||| ||| | |||||||||||||| || |||||||||| |||||||||||| ||||||| |
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| T |
8962251 |
accattaacctgattccccgctaccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttca |
8962178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 21687981 - 21688253
Alignment:
| Q |
1 |
accatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgttagttagatttggatat |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| || | | || | | | |
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| T |
21687981 |
accatcaactttgcttccagctgctgttgttgaagtatgtgtcccgtgaccgtttgtgtcacgtgtggagttcaaaattgttgtactaatgttggagtgt |
21688080 |
T |
|
| Q |
101 |
tttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaat------------tgttggtattttcaaattgacata |
188 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||| ||| ||||||||||||| |
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| T |
21688081 |
tttgccaagaagcctttgttgaagaacctagctccaatgagtttcttgttgcacaaagataaattgattgactggatgttggaattctcaaattgacata |
21688180 |
T |
|
| Q |
189 |
attgccctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaacacc |
261 |
Q |
| |
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|||| |||||||||||||| || |||| || ||| ||| |||| | |||||||||||||||||||||||||| |
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| T |
21688181 |
attggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacacc |
21688253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 34963608 - 34963754
Alignment:
| Q |
17 |
ccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgttagttagatttggatattttgccaaaaaccctt |
116 |
Q |
| |
|
|||||||||||||||||||| || || |||||||| | |||||||||||||||||| || | | || | || ||||||||||| || || ||| |
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| T |
34963608 |
ccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgtggagtttaatcctaag---gtgatgttaggatattttgctaataatcctc |
34963704 |
T |
|
| Q |
117 |
tgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattg |
166 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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|
| T |
34963705 |
tgttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattg |
34963754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 34963779 - 34963843
Alignment:
| Q |
194 |
cctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaac |
258 |
Q |
| |
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|||||||||||||||||||||| || ||| ||| ||||||||| || ||||||||||||||||| |
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| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaac |
34963843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 49006943 - 49006880
Alignment:
| Q |
194 |
cctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaa |
257 |
Q |
| |
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||||||||| |||| || || | |||||| |||| ||||||||| ||||||||||||||||||| |
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|
| T |
49006943 |
cctttccatcttgaggggatattaggcatctcatcatctttgaagctttcactttctggccaaa |
49006880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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