View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_11 (Length: 284)
Name: NF10859_low_11
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 7342057 - 7341803
Alignment:
| Q |
16 |
gtaaaatggttggagaacgcgttgtttcaattggataattttttgttgttggctatctgtatcaaagaaaactgtgatgaaactatgagaactgatgggg |
115 |
Q |
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| T |
7342057 |
gtaaaatggttggagaacgcgttgtttcaattggataattttttgttgttggctatctgtatcatagaaaactgtgatgaaactatgagagctgatgtag |
7341958 |
T |
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| Q |
116 |
aaactgtggaagacagagtgaagtatcttcaaagctatatgcggatttatatcaactcagcaaaatcttcatcctcttagttctgattttgtgttactct |
215 |
Q |
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| T |
7341957 |
aaactgtggaagacagagtgaagtatctccaaagctatatgcggatttatatcaactcagcaaaatcttcatcctcttagttctgattttgtgttactct |
7341858 |
T |
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| Q |
216 |
cttctgaaatgttgcaactaattattagattatcttatatggtagcctgtttttg |
270 |
Q |
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| T |
7341857 |
cttctgaaatgttgcaactaattattagattatcttatatggtagcctgtttttg |
7341803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 270
Target Start/End: Original strand, 6829089 - 6829242
Alignment:
| Q |
119 |
ctgtggaagacagagtgaagtatcttcaaagctatatgcggatttatatcaactcagcaaaatcttcatcctcttagttctgattttg--tgttactctc |
216 |
Q |
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| T |
6829089 |
ctgtggaggatagaatgaagtgtctccgaggctttattcgaatttatctcaagtcagaaatatcttcatcctcatagttctgattttgtcttttattgtc |
6829188 |
T |
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| Q |
217 |
ttctgaaatgttgcaactaattattagattatcttatatggtagcctgtttttg |
270 |
Q |
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| T |
6829189 |
ttttggaatgttgctactgatttctagattatcttgtatggttgcatgtttttg |
6829242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 7303294 - 7303233
Alignment:
| Q |
199 |
tgattttgtgtt-actctcttctgaaatgttgcaactaatt-attagattatcttatatggt |
258 |
Q |
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| T |
7303294 |
tgattttgtgtttactctcttttgaaatgttacaactgatttatttgattatcttatatggt |
7303233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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