View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_12 (Length: 260)
Name: NF10859_low_12
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 34215714 - 34215481
Alignment:
| Q |
19 |
ctgtcatgtccgaaggtaatagcatgctcacacaaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaat |
118 |
Q |
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| T |
34215714 |
ctgtcatgtccgaaggtaatagcatgctcacgcaaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaat |
34215615 |
T |
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| Q |
119 |
tcgggagtacgatcaaaaggcagcggaagatccattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccg |
218 |
Q |
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| T |
34215614 |
tcgggagtacgatcaaaaggcagcggaagatccattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccg |
34215515 |
T |
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| Q |
219 |
ccgtatagaacctgctcaaggggtgcttcatctc |
252 |
Q |
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| T |
34215514 |
ccgtatagaacctgctcaaggggtgcttcatctc |
34215481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 11213027 - 11213256
Alignment:
| Q |
19 |
ctgtcatgtccgaaggtaatagcatgctcacacaaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaat |
118 |
Q |
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| T |
11213027 |
ctgtcatgtccgaaggcaatagcatgctcatg-aaagtgaaattttagttcatcagagcaacccaaatattcaacgtgatatggaattgtggaatagaat |
11213125 |
T |
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| Q |
119 |
tcgggagtacgatcaaaaggcagcggaagatccattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccg |
218 |
Q |
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| T |
11213126 |
tcgggagtacgatcaaaaggcagcgggagatccaatcacaccggttttatccaagaagcaaaaacagaaatt---gcgacaacgtgtccttgggaaactg |
11213222 |
T |
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| Q |
219 |
ccgtatagaacctgctcaaggggtgcttcatctc |
252 |
Q |
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| T |
11213223 |
cggtatagaacccgttcaaggggtgattcatctc |
11213256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 35222538 - 35222711
Alignment:
| Q |
79 |
acccaaatattcaacgtgatatggaattatggaatcgaattcgggagtacgatcaaaaggcagcggaagatccattcacaccggttttgtccaagaagca |
178 |
Q |
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| T |
35222538 |
acccaaatatttgacatgatatggaattgtgaaatagaattcgagagtacgatcaaaagggaaaggaagatccatttactcttgttttgtccaagaagca |
35222637 |
T |
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| Q |
179 |
aaaactgaaattcagacaacaacatgtccttgggaaaccgccgtatagaacctgctcaaggggtgcttcatctc |
252 |
Q |
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| T |
35222638 |
aaaacagaaattgcggcaacaacaaattcttgggaagccgccatattgaacccgctcaaggggtgactcatctc |
35222711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 18485355 - 18485412
Alignment:
| Q |
19 |
ctgtcatgtccgaaggtaatagcatgctcacacaaagtgaaattttagttcattacag |
76 |
Q |
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| T |
18485355 |
ctgtcatgttcgaaggcaatagcatgctcacgcatagagaaattttagttcatcacag |
18485412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 3568983 - 3569166
Alignment:
| Q |
51 |
caaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaattcgggagtacgatcaaaaggcagcggaagatc |
150 |
Q |
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| T |
3568983 |
caaagtgaaattatagtttatcacaacaacccaaatattcaacgtgatatggaagt--ggcatagaattcgggagtacgatcaaaaggcagtggaagatc |
3569080 |
T |
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| Q |
151 |
cattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccgccgtatagaacctgctca |
236 |
Q |
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| T |
3569081 |
tattcacgctggttttgtccaagaagcaaaaacagaaattacgacaacaagaagtccttaggaaaccgccgtatagaacccgctca |
3569166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 17368039 - 17368129
Alignment:
| Q |
153 |
ttcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccgccgtatagaacctgctcaaggggtg |
243 |
Q |
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| T |
17368039 |
ttcactccggttttgtccaagaagcaaaaacagaaattgcgacaacaacatgtccttgggaaaccgccgtataaaacccgctcaaagggtg |
17368129 |
T |
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