View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10859_low_13 (Length: 256)
Name: NF10859_low_13
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 6744217 - 6744460
Alignment:
| Q |
1 |
tttagatatattatgttct-ggattttcctctttgaaaggaataatgtgaatctaaggcatagtttatttgatgcatatcagtccaatggtcaataatat |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6744217 |
tttagatatattatgttcttggattttcctctttgaaaggaataatgtgaatctaaggcatagtttatttgatgcatatcagtccaatggtcaataatat |
6744316 |
T |
|
| Q |
100 |
catgtttttgttgtttcaaaatcgagagaactgtgttgcaacacaagacaaagttgtgagtcactaaaaaatgttggagtgtaaaccatgatgttactcn |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6744317 |
catgttttggttgtttcaaaatcgagagaactgtgttgcaacacaagacaaagttgtgagtcactataaaatgttggagtgtaaaccatgatgttactct |
6744416 |
T |
|
| Q |
200 |
nnnnnnnnctttctcccatgaactcatcattcgtttctctgctcct |
245 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
6744417 |
atttttt--tttctcccatgaactcatcattcatttctctgttcct |
6744460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4433612 - 4433859
Alignment:
| Q |
1 |
tttagatatattatgttctggattttcctctttgaaaggaataatgtgaatctaaggcatagtttatttgatgcatatcagtccaatggt--caataata |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4433612 |
tttagatatattatgttctggatcttcctctttgaaaggaataatgtgaatctaaggcatagtttatttgatgcatatcagtccaatggttacaataata |
4433711 |
T |
|
| Q |
99 |
tcatgtttttgttgtttcaaaatcgagagaactgtgttgcaacacaagacaaagttgtgagtcactaaaaaatgttggagtgtaaaccatgatgttactc |
198 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4433712 |
tcatgttttggttgttgcaaaatcgagagaactgtgttgcaacacaagacaaagttgtgactcactataaaatgttggagtgtaaaccatgatgttactc |
4433811 |
T |
|
| Q |
199 |
-nnnnnnnnnctttctcccatgaactcatcattcgtttctctgctcct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4433812 |
tctattttttttttctcccatgaactcatcattcgtttctctgttcct |
4433859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University