View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10859_low_15 (Length: 247)
Name: NF10859_low_15
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 8885594 - 8885807
Alignment:
| Q |
14 |
agaactgaagtatcaatcttttagtgtggttagtggtaaatcaataaaataaattcaattaggacaagaaaataatatataatacgccatgaaagagaag |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8885594 |
agaactgaagtatcaatcttttaatgtggttagtggtagatcaataaaataaattcaattaggacaagaaaataatatataatacgccatgaaagagaag |
8885693 |
T |
|
| Q |
114 |
nnnnnnnntaccattatggaacgtgctaaatcgccaatgaaagttaaaattaattctcctcccttcgtttcacagcaaatgttacatttaatttgttcat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| |
|
|
| T |
8885694 |
aaaaaaaataccattatggaacgtgctaaatcgccaacgaaagttaaaattaattctcctcccttcatttcacaacaaatgttac-----atttgttcat |
8885788 |
T |
|
| Q |
214 |
ttcgtacagattaaaatat |
232 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
8885789 |
ttcatacagattaaaatat |
8885807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University