View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10859_low_17 (Length: 241)
Name: NF10859_low_17
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2068227 - 2068003
Alignment:
| Q |
1 |
tgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggtgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2068227 |
tgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggtgagt |
2068128 |
T |
|
| Q |
101 |
gtaattaacataaattaataactacgaatatacttcttatttgttttttattgtaatagtttatacttatat-ttttctgttaggacaaatctatcatta |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2068127 |
gtaattaacataaattaataactatgaatatacttcttatttgttttttattgtaatagtttatacttatattttttctgttaggacaaatctatcatta |
2068028 |
T |
|
| Q |
200 |
tatatgcaataccttcattccattt |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2068027 |
tatatgcaataccttcattccattt |
2068003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34678697 - 34678804
Alignment:
| Q |
1 |
tgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggtgagt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| |
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| T |
34678697 |
tgcagcaaagggtatgttctcttttcttaaggactcagctggagtacaagatagtcctaaacttcaagtccatgctggaaaagtttttggaatggtgagt |
34678796 |
T |
|
| Q |
101 |
gtaattaa |
108 |
Q |
| |
|
|||||||| |
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|
| T |
34678797 |
gtaattaa |
34678804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 18270803 - 18270907
Alignment:
| Q |
1 |
tgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggtgagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
18270803 |
tgcagcaaagggcatgttctcttttcttaaggattcagctggagtacaagatagtcctaaactccaagcccacgctgaaaaagtttttggaatggtgagt |
18270902 |
T |
|
| Q |
101 |
gtaat |
105 |
Q |
| |
|
|||| |
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|
| T |
18270903 |
ttaat |
18270907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 34685846 - 34685950
Alignment:
| Q |
1 |
tgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggtgagt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || | ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
34685846 |
tgcagcaaagggtatgttctcttttcttaaggactcaacgggagtacaagatagtccccaactccaagctcacgctgaaaaagtttttggaatggtgagt |
34685945 |
T |
|
| Q |
101 |
gtaat |
105 |
Q |
| |
|
||||| |
|
|
| T |
34685946 |
gtaat |
34685950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 27842496 - 27842396
Alignment:
| Q |
5 |
gcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggtgagtgtaa |
104 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||| ||| ||| |
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|
| T |
27842496 |
gcaaaaggcttgttctcttttcttaaggactcagctggagtacaagatagtcctcaactccaagctcacgctgaaaaagtttttggactggtaagtataa |
27842397 |
T |
|
| Q |
105 |
t |
105 |
Q |
| |
|
| |
|
|
| T |
27842396 |
t |
27842396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34430561 - 34430466
Alignment:
| Q |
1 |
tgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggt |
96 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||| |||||||||||||||||||| |||| ||| |||||||| ||||||||||| |||||| |
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|
| T |
34430561 |
tgcagcaaaaggcatgttctcttttcttaaagatacaactggagtacaagatagtcctcaacttcaagctcatgctgcaaaagtttttgaaatggt |
34430466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 34422289 - 34422189
Alignment:
| Q |
1 |
tgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggtgagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||| |||| ||| ||||||||||| || ||| |||||||||| |
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|
| T |
34422289 |
tgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagt |
34422190 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
34422189 |
g |
34422189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34649228 - 34649335
Alignment:
| Q |
1 |
tgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgctgaaaaagtttttggaatggtgagt |
100 |
Q |
| |
|
|||| |||||| ||| |||||||||| |||| | | ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||| || |
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| T |
34649228 |
tgcaacaaaggatatgctctcttttctgaagggctcgactggagtacaagatagtcccgaactccaagctcatgctgaacaagtttttgaaatggtgcgt |
34649327 |
T |
|
| Q |
101 |
gtaattaa |
108 |
Q |
| |
|
| |||||| |
|
|
| T |
34649328 |
ggaattaa |
34649335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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