View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10859_low_2 (Length: 535)
Name: NF10859_low_2
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_2 |
 | |
|
| [»] scaffold1880 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 15527570 - 15527065
Alignment:
| Q |
18 |
gaaacagctaagaaaacatttcttttcttcggttgtgtaatgctggatttaatatcatttcgtttgcctttttactcccttaggtaggtgcttatttgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15527570 |
gaaacagctaagaaaacatttctttttctccgttgtgtaatgctggatttaatttcattcggtttgcctttttactcccttaggtagatgcttatttgaa |
15527471 |
T |
|
| Q |
118 |
taaattctaaccagttgat----gaaatgatgattcaacacataacaaagaggggaaaacacgatgaggaagacagattgagtgaattctctgattgcat |
213 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15527470 |
taaattctaaccagttgatcgatgaaatgacgattcaacacataacaaagaggggaaaacacgatgaggaagacagattgagcgaattctctgattgcat |
15527371 |
T |
|
| Q |
214 |
tatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgggagcatatttggaaatatatttccaatctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15527370 |
tatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgggagcatatttggaaatatatttccaatctt |
15527271 |
T |
|
| Q |
314 |
agactacattgctcaaacttttccagtttaaagagtttagataaattcgtgtctagaattctgtctcttcgtcatagcaaaattgtattgcaaaatgttt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15527270 |
agactacattgctcaaacttttccagtttaaagagttttgataaattcgtgtctagaattctgtctcttcgtcatagcaaaattgtattgcaaactgttt |
15527171 |
T |
|
| Q |
414 |
attttgaacgtagtggtagtattgagtttggcctacttaaaaaagtagcaaattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15527170 |
attttgaacgtagtggtagtattgagtttggcctacttaaaaaagtagcaaattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgt |
15527071 |
T |
|
| Q |
514 |
gaaagg |
519 |
Q |
| |
|
|||||| |
|
|
| T |
15527070 |
gaaagg |
15527065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 385
Target Start/End: Complemental strand, 15582278 - 15582097
Alignment:
| Q |
204 |
ctgattgcattatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgggagcatatttggaaatatat |
303 |
Q |
| |
|
||||||||||| ||||| ||||| |||| ||||| | ||||| |||||| |||||||||||| || |||| ||||||||| |||||||||||||| |||| |
|
|
| T |
15582278 |
ctgattgcattctcatttacattatgtcttttttaaacactatagacgccgttcgaacttgcgttttgtctaaaagatggaagcatatttggaaacatat |
15582179 |
T |
|
| Q |
304 |
ttccaatcttagactacattgctcaaacttttccagtttaaagagtttagataaattcgtgtctagaattctgtctcttcgt |
385 |
Q |
| |
|
| | | |||| | | |||| |||| ||||||| | ||| ||| |||| | ||||| |||||||| || ||||||||||| |
|
|
| T |
15582178 |
tcctatccttacattgcattactcagacttttcaactttgaagtgtttccacaaatttgtgtctagggttttgtctcttcgt |
15582097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 33840372 - 33840296
Alignment:
| Q |
222 |
acattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgggagcatatttggaaa |
298 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||| |||||| |||||| | ||| |||||||| |
|
|
| T |
33840372 |
acattttgtcatttttgagaatcgaatacgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaa |
33840296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1880 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 784 - 713
Alignment:
| Q |
194 |
agtgaattctctgattgcattatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgc |
265 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| || | ||||| || ||| |||||||||||||||| |
|
|
| T |
784 |
agtgaattatctgattgcattatcattcatattttatcttatttgaataccaaaatcgctgttcgaacttgc |
713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 6889175 - 6889211
Alignment:
| Q |
247 |
agacgctgttcgaacttgcattctgtccaaaagatgg |
283 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
6889175 |
agacgctgttcaaacttgcattctatccaaaagatgg |
6889211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University