View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_24 (Length: 222)
Name: NF10859_low_24
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 44500726 - 44500916
Alignment:
| Q |
14 |
agagaccatcaatgattttatgttagcaagctctagtatccagctgaatagaaaataaggagagtcttcgctaaatggaactacatgtgcataaatatct |
113 |
Q |
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| T |
44500726 |
agagaccgtcaatgattttatgttagcaagctctagtagccagctgaat-gaaaataaggagagtcttcgctaaatggaactacatgtgcataaatatct |
44500824 |
T |
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| Q |
114 |
acatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaacttagatc |
205 |
Q |
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| T |
44500825 |
acatgtttaagagaagaagcattgcttccagaaagattctgataatgactaccagtaaaaacaaacttacaaagacttggagtacttagatc |
44500916 |
T |
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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 45910473 - 45910577
Alignment:
| Q |
101 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaactt |
200 |
Q |
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| T |
45910473 |
tgcatgaatctctacatgtttaagagaagaaacattgtttgcagagagtttctgaaaaggagtaccggaaaaaacaaacgtacaaagacttggagtacat |
45910572 |
T |
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| Q |
201 |
agatc |
205 |
Q |
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| T |
45910573 |
agatc |
45910577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 2995864 - 2995894
Alignment:
| Q |
101 |
tgcataaatatctacatgtttaagagaagaa |
131 |
Q |
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| T |
2995864 |
tgcataaatatctacatgtttaagagaagaa |
2995894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 20994274 - 20994368
Alignment:
| Q |
101 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggag |
195 |
Q |
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| T |
20994274 |
tgcatgaatatctacatgtttaagagaagaaatattgctcccaatgattctctgataaggaataccattaaaagtaaacgtacaaagacttggag |
20994368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 3978822 - 3978728
Alignment:
| Q |
101 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggag |
195 |
Q |
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| T |
3978822 |
tgcatcaatatctacatgtttaagagaagaaatactgctcccagatagactcagataaggagtaccggtaaaaacaaacttccaaagacttggag |
3978728 |
T |
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