View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_27 (Length: 216)
Name: NF10859_low_27
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 51035454 - 51035269
Alignment:
| Q |
15 |
gtagcaaagtggttaggcttcaaggaggcctcttacgtggagagttatgtaactaggggttatgtagagttgaaggacattcatgaacttgaaccaatgt |
114 |
Q |
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| T |
51035454 |
gtagcaaaatggttaggcttcaaggaggcctcttacgtggagagttatgtaactaggggttatgtagagttgaaggacactcacgaacttgaaccaatgt |
51035355 |
T |
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| Q |
115 |
tcaaggagtacttaggcaaaggttttcgagttggagctgttccatgtgatgacaagtgtgcttattggtttttcacatgtactcct |
200 |
Q |
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| T |
51035354 |
tcaaggagtacttaggcaaaggttttcgagttggagctgttccatgtgatgacaagtgtgcttattggtttttcacatgtactcct |
51035269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 51031210 - 51031028
Alignment:
| Q |
18 |
gcaaagtggttaggcttcaaggaggcctcttacgtggagagttatgtaactaggggttatgtagagttgaaggacattcatgaacttgaaccaatgttca |
117 |
Q |
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| T |
51031210 |
gcaaaatggttagggttcaaggaagcctcatacacagggagatatgcaaccagaggttatgcagagttgaagaccactcacaaccttgaaccaatgttca |
51031111 |
T |
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| Q |
118 |
aggagtacttaggcaaaggttttcgagttggagctgttccatgtgatgacaagtgtgcttattggtttttcacatgtactcct |
200 |
Q |
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| T |
51031110 |
tgcagtactttggcaaaggttttagggctggggctatcccatgtgatgagaaaagtgtttattggtttttcacatggactcct |
51031028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 51063962 - 51063780
Alignment:
| Q |
18 |
gcaaagtggttaggcttcaaggaggcctcttacgtggagagttatgtaactaggggttatgtagagttgaaggacattcatgaacttgaaccaatgttca |
117 |
Q |
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| T |
51063962 |
gcaaaatggttagggttcaaggaagcctcatacacagggagatatgcaaccagaggttatgcagagttgaagaccactcacaaccttgaaccaatgttca |
51063863 |
T |
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| Q |
118 |
aggagtacttaggcaaaggttttcgagttggagctgttccatgtgatgacaagtgtgcttattggtttttcacatgtactcct |
200 |
Q |
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| T |
51063862 |
tgcagtactttggcaaaggttttagggctggggctatcccatgtgatgagaaaagtgtttattggtttttcacatggactcct |
51063780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 40616789 - 40616974
Alignment:
| Q |
15 |
gtagcaaagtggttaggcttcaaggaggcctcttacgtggagagttatgtaactaggggttatgtagagttgaaggacattcatgaacttgaaccaatgt |
114 |
Q |
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| T |
40616789 |
gtagcaaagtggctaggcttcaaggaggcctcttacacagggagatatgcagccaggggctattcagagtgcgagaccaatcatgagttggaaccaatgt |
40616888 |
T |
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| Q |
115 |
tcaaggagtacttaggcaaaggttttcgagttggagctgttccatgtgatgacaagtgtgcttattggtttttcacatgtactcct |
200 |
Q |
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| T |
40616889 |
tcatgcaatactttggtaaaggttttagagctggagctcttccatgtaatgagaagggtgtttactggttttttacatggactcct |
40616974 |
T |
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