View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10859_low_28 (Length: 209)
Name: NF10859_low_28
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 2150178 - 2150001
Alignment:
| Q |
14 |
caaaggctaaaaatatatacttttttccagtggtatggggaatatctggacttttgttcttcatgtgggtaactttatctgtatgtaaagatagacagca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2150178 |
caaaggctaaaaatatatacttttttccagtggtatggggaatatctggacttttgttcttcatgtgggtaactttatctgtatgtaaagatagacagca |
2150079 |
T |
|
| Q |
114 |
aaaccatacccaacaaacacaaacaattacgaacatagaaccaagtaatcaggaacctcattggtttgtgtttggact |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2150078 |
aaaccatacccaacaaacacaaacaattacgaacatagaaccaagtaatcaggaacctcattggtttgtgtttggact |
2150001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 2141136 - 2140992
Alignment:
| Q |
47 |
tatggggaatatctggacttttgttcttcatgtgggtaactttatctgtatgtaaagatagacagcaaaaccatacccaacaaacacaaacaattacgaa |
146 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2141136 |
tatggggactaactggaattttgctcttcatgtgggtaactctatccctatgtaaagatagacagcaaaatcatacccaacaaacacaaacaattacgaa |
2141037 |
T |
|
| Q |
147 |
catagaaccaagtaatcaggaacctcattggtttgtgtttggact |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2141036 |
catagaaccaagtaatcaggaacctcattggtttgtgtttggact |
2140992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 2145694 - 2145526
Alignment:
| Q |
23 |
aaaatatatacttttttccagtggtatggggaatatctggacttttgttcttcatgtgggtaactttatctgtatgtaaagatagacagcaaaaccatac |
122 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||| || ||||| ||||| || ||||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
2145694 |
aaaatatctacttttttgaagtagtatggggagtaactggaattttgctcctcatgggggtaactctatccctatgtaaagatagacagcaaaaccatat |
2145595 |
T |
|
| Q |
123 |
ccaacaaacacaaacaattacgaacatagaaccaagtaatcaggaacctcattggtttgtgtttggact |
191 |
Q |
| |
|
||| |||||||||||||||| | ||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
2145594 |
ccagcaaacacaaacaattatcatcatagaaccaagtgatcgggaaccctcttggtttgtgtttggact |
2145526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University