View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_3 (Length: 436)
Name: NF10859_low_3
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 115 - 416
Target Start/End: Original strand, 36289298 - 36289597
Alignment:
| Q |
115 |
gggtgtatggtttggcatggggagttagttgatgttcaaaggttagaaaatcaaggaaatacactcaacattcgtcttgctgattctgatttaggtaaag |
214 |
Q |
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| T |
36289298 |
gggtgtatggtttggcatggggagttagttgattttcaaaggttagaaaatcaaggaaatacactcaacattcgtcttgctgattctgatttaggtaaag |
36289397 |
T |
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| Q |
215 |
aaaagattcattatttttaattggtaacattagtttcccagttttgatgtcaggttgtaatgttagcatgaaaatgataacataaatatatatatgtctt |
314 |
Q |
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| T |
36289398 |
aaaagattcattatttttaattggtaacattagtttcccagttttgatgtcaggttgtaatgttagcatgaaaatgataacataa--atatatatgtctt |
36289495 |
T |
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| Q |
315 |
caaatacagttgatgggaagaaaaagaccaaaattgggataatattaggtgttgtcgcggggattatctgccttggaatctttgtatggcttctatgtag |
414 |
Q |
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| T |
36289496 |
caaatacaggtgatgggaagaaaaagaccaaaattgggataatattaggtgttgtcgcggggattatctgccttggaatctttgtatggcttctatgtag |
36289595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 51850467 - 51850543
Alignment:
| Q |
17 |
actttgttagcaggatcattggcattctttattcggtatcttgcagatgttcctggccagatttttcatgcaatttt |
93 |
Q |
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| T |
51850467 |
actttgttagcaggatcattggcattctttattcggtatcttgcagatgttcctggccagatttttcatgcaatttt |
51850543 |
T |
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