View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10859_low_4 (Length: 412)

Name: NF10859_low_4
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10859_low_4
NF10859_low_4
[»] chr5 (12 HSPs)
chr5 (1-260)||(19806735-19806994)
chr5 (261-412)||(19805853-19806005)
chr5 (17-189)||(13712165-13712337)
chr5 (1-105)||(20111942-20112046)
chr5 (28-184)||(17377259-17377421)
chr5 (64-188)||(19969602-19969729)
chr5 (22-105)||(19653894-19653977)
chr5 (4-189)||(20049333-20049521)
chr5 (137-178)||(1348047-1348088)
chr5 (28-105)||(17383709-17383786)
chr5 (59-102)||(9618923-9618966)
chr5 (23-103)||(1347930-1348010)
[»] chr2 (1 HSPs)
chr2 (8-185)||(15784561-15784737)
[»] scaffold0009 (2 HSPs)
scaffold0009 (28-106)||(40586-40664)
scaffold0009 (28-106)||(33968-34046)
[»] chr3 (5 HSPs)
chr3 (21-187)||(24890843-24891012)
chr3 (21-187)||(24912761-24912930)
chr3 (17-105)||(32226544-32226632)
chr3 (29-190)||(32242030-32242194)
chr3 (138-190)||(32226456-32226508)
[»] chr6 (1 HSPs)
chr6 (23-190)||(16258444-16258614)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 19806994 - 19806735
Alignment:
Q  1 aaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19806994 aaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccaat 19806895  T
Q  101 catgagcgccaatgcaccaagatagatgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttcttcattggcaagatttgt 200  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  19806894 catgagcgccattgcaccaagatagttgaaggtcagttaagttttcaaacacggaaaagcctttgtaatataaattgatttcttcattggcaagatttgt 19806795  T
Q  201 ctccatctgcgaagtcacacataagattagtcgaaatgaaaatatttgacttaatgtatc 260  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19806794 ctccatctgcaaagtcacacataaggttagtcgaaatgaaaatatttgacttaatgtatc 19806735  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 261 - 412
Target Start/End: Complemental strand, 19806005 - 19805853
Alignment:
Q  261 aaaatttagctcatataatattgacgataaa-gtatcatacctcgtgtacacttagaaatcggacattataaattgctctgaacggaaggtcgaataatc 359  Q
    |||||| ||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19806005 aaaattaagctcatataatattgatgataaaagtatcatacctcatgtacacgtagaaatcggacattataaattgctctgaacggaaggtcgaataatc 19805906  T
Q  360 ttatatcagcattgttcaacttggataaggatttaaagttccctcccgttgta 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19805905 ttatatcagcattgttcaacttggataaggatttaaagttccctcccgttgta 19805853  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 13712165 - 13712337
Alignment:
Q  17 attgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatg---agcgccaat 113  Q
    ||||| |||||||||||||||||  ||||  ||||||||| |||||||||||  |||| ||||||||||||||||| | |||  ||||   |||   ||     
T  13712165 attgaagtgacaaacaaacctttacaattcgaagagtttgaagtttgggacagctttgtagcattttcactacctcgtaccacacatgtctagcttgaa- 13712263  T
Q  114 gcaccaagatagatgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttcttcattg 189  Q
      || |   ||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  13712264 --acaactttagatgaaggttggttaagttttcaaacacaggaaagcctttgtaatatgaattgatttcttcattg 13712337  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20112046 - 20111942
Alignment:
Q  1 aaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagt 100  Q
    |||||| ||||||||  ||||||||||||||||||||||  ||||  ||| | ||| ||||||||||| || ||||||||||||||||||||| ||||||    
T  20112046 aaatcagtaactatcctttgatgtgacaaacaaacctttacaattttaagtgcttgaagtttgggacatttctggagcattttcactacctcaccccagt 20111947  T
Q  101 catga 105  Q
    |||||    
T  20111946 catga 20111942  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 17377421 - 17377259
Alignment:
Q  28 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatgagcgccaatgc------accaag 121  Q
    ||||||||||||  ||| | ||||||||| |||||||||||||| || |||||||||| |||| | |||||||||||| ||| |||||      ||||||    
T  17377421 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcaataccacctcccagtcatgaacgctaatgcttggagaccaag 17377322  T
Q  122 atagatgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttctt 184  Q
    |||| |||||   ||||| |||||||||||  |||| || ||||| | || ||||||||||||    
T  17377321 atagttgaagtctggttatgttttcaaacatgggaaggcttttgtcaaatgaattgatttctt 17377259  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 19969602 - 19969729
Alignment:
Q  64 ggacaattttggagcattttcactacctcatcccagtcatgagcgcc---aatgcaccaagatagatgaaggtcggttaagttttcaaacactggaaagc 160  Q
    |||||||||||||| |||||||||||||| ||||| ||||||  |||   | | | |||| ||||  | || | |||||||||| ||||||||||||||     
T  19969602 ggacaattttggagtattttcactacctcgtcccactcatgaatgccttcattcccccaacatagtagcagtttggttaagtttccaaacactggaaagt 19969701  T
Q  161 ctttgtaatataaattgatttcttcatt 188  Q
    ||||||||||| ||||||||||| ||||    
T  19969702 ctttgtaatatgaattgatttctgcatt 19969729  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 19653894 - 19653977
Alignment:
Q  22 tgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatga 105  Q
    |||| |||||||||||||||||||  ||||| ||| ||||||||||||| ||| ||||||||||  ||||| ||||||| ||||    
T  19653894 tgtgtcaaacaaacctttttaattttaagagcttgaagtttgggacaatattgtagcattttcataacctcttcccagttatga 19653977  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 20049521 - 20049333
Alignment:
Q  4 tcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcat 103  Q
    ||||| ||||||  ||||||||||||||||||||||  ||||  ||||| ||  |||||  |||| || |||||||||||||| |||||| | |||||||    
T  20049521 tcaatcactatcctttgatgtgacaaacaaacctttacaatttgaagagcttcaagttttcgacatttctggagcattttcaccacctcacctcagtcat 20049422  T
Q  104 gagcgcc--aatg-caccaagatagatgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttcttcattg 189  Q
    ||  |||   |||  |||||  ||| ||||| || |||||||||  |||||| ||||  ||||| |||||| |||||||||||||||||    
T  20049421 gaatgcctttatgataccaatgtagttgaagttcagttaagtttcaaaacacgggaagtcctttataatatgaattgatttcttcattg 20049333  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 1348047 - 1348088
Alignment:
Q  137 ttaagttttcaaacactggaaagcctttgtaatataaattga 178  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  1348047 ttaagttttcaaacacgggaaagcctttgtaatatgaattga 1348088  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 17383786 - 17383709
Alignment:
Q  28 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatga 105  Q
    ||||||||||||  ||| | ||||||||| ||| |||||||||| || ||||||||||||||| | ||||||| ||||    
T  17383786 aaacaaacctttagaatggtaagagtttgaagtatgggacaattctgtagcattttcactaccacctcccagttatga 17383709  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 9618966 - 9618923
Alignment:
Q  59 gtttgggacaattttggagcattttcactacctcatcccagtca 102  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||||    
T  9618966 gtttgggacaactttggagcattttcattacatcatcccagtca 9618923  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 1347930 - 1348010
Alignment:
Q  23 gtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcat 103  Q
    |||| ||||||||||||  ||| |  |||||||| ||||| |||||||| | |||||||||||||| |||| |||| ||||    
T  1347930 gtgagaaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactatctcaccccaatcat 1348010  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 15784737 - 15784561
Alignment:
Q  8 taactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatgagc 107  Q
    ||||||||| |||||| |||||||| ||||||| ||||  ||||| ||| ||||| |||||||| || |||||||||||||||||| |  ||||||||      
T  15784737 taactatcg-ttgatgcgacaaacagaccttttcaattctaagagcttgaagttttggacaattctgtagcattttcactacctcaacatagtcatgaat 15784639  T
Q  108 gccaatgca-ccaagatagatgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttcttc 185  Q
    ||| ||| | |||| |||| ||||| ||| |||||||| ||||||| ||||| || |||| |||| |||||||||||||    
T  15784638 gcc-atgaatccaacatagttgaagttcgattaagtttccaaacacaggaaatccgttgttatatgaattgatttcttc 15784561  T

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Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 40664 - 40586
Alignment:
Q  28 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatgag 106  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||| |||||||  |||||||||||    
T  40664 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcatgag 40586  T

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Target: scaffold0009; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 34046 - 33968
Alignment:
Q  28 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatgag 106  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||  |||||||||| || |||||||  |||||||||||    
T  34046 aaacaaacctttttaatcgaaagagtttgaagtttcggacaatgctggagcatttgcattacctcactccagtcatgag 33968  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 24891012 - 24890843
Alignment:
Q  21 atgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatgagcgccaa--tgcacc 118  Q
    |||||||||||||||||||| ||||   ||| |||| |||||||||||||  |  |||||||||||| |||| ||||| ||||||  ||     || |||    
T  24891012 atgtgacaaacaaaccttttgaatttttagaatttgaagtttgggacaatcctaaagcattttcactgcctcgtcccaatcatgaatgcattcttgaacc 24890913  T
Q  119 -aagatagatgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttcttcat 187  Q
     || | || ||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  24890912 gaacacagttgaagttcggttaagttttcaaacacaggaaaacctttgtaatatgaattgatttcttcat 24890843  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 24912930 - 24912761
Alignment:
Q  21 atgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatgagcgcc--aatgcacc 118  Q
    |||||||||||||||||||| ||||   |||||||| |||||||||||||  |  |||||||||||||||||||| || ||||||  |||    || |||    
T  24912930 atgtgacaaacaaaccttttgaatttttagagtttgaagtttgggacaatcctaaagcattttcactacctcatctcaatcatgaatgccttcttgaacc 24912831  T
Q  119 -aagatagatgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttcttcat 187  Q
     || | || ||||| |||||| ||||||||||||  ||||| ||||| |||||| |||||||||||||||    
T  24912830 taacacagttgaagatcggttcagttttcaaacataggaaaacctttataatatgaattgatttcttcat 24912761  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 32226632 - 32226544
Alignment:
Q  17 attgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatga 105  Q
    ||||| ||||| |||||||||||  ||||| ||||||||| |||||||||||||  |||||||||| ||||||||||| ||| ||||||    
T  32226632 attgacgtgaccaacaaacctttgaaattggaagagtttgaagtttgggacaataatggagcatttgcactacctcataccaatcatga 32226544  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 32242030 - 32242194
Alignment:
Q  29 aacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatgagcgcca--atgca-ccaagatag 125  Q
    |||||||||||  ||||| ||||||||| || ||||||||||  |||||||||| || |||||||| ||| | ||||  || |  ||  | |||| ||||    
T  32242030 aacaaacctttaaaattgaaagagtttgaaggttgggacaataatggagcatttgcagtacctcataccaattatgaatgcaataatcaaaccaaaatag 32242129  T
Q  126 atgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttcttcattgg 190  Q
      |||| || |||||||||||||||||  || |||||| ||||||| |||||||||||| |||||    
T  32242130 tcgaagttcagttaagttttcaaacacatgatagccttggtaatatgaattgatttcttgattgg 32242194  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 32226508 - 32226456
Alignment:
Q  138 taagttttcaaacactggaaagcctttgtaatataaattgatttcttcattgg 190  Q
    |||||||||||||||  || |||||| ||||||| |||||||||||| |||||    
T  32226508 taagttttcaaacacatgatagccttggtaatatgaattgatttcttgattgg 32226456  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 16258444 - 16258614
Alignment:
Q  23 gtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccagtcatgagcgccaat---gcacca 119  Q
    ||||| |||||||||||  ||||| |||| |||| ||||| |||||||| |||||||||| ||||||||||| ||| ||||||  || | |     ||||    
T  16258444 gtgaccaacaaacctttgaaattgaaagactttgaagtttcggacaattatggagcatttgcactacctcataccaatcatgaatgcaattatcaaacca 16258543  T
Q  120 agatagatgaaggtcggttaagttttcaaacactggaaagcctttgtaatataaattgatttcttcattgg 190  Q
    | ||||  |||| ||  |||||||||||||||| ||  |||||| ||||||| |||||||||||| |||||    
T  16258544 aaatagtcgaagttcaattaagttttcaaacacagggcagccttggtaatatgaattgatttcttgattgg 16258614  T

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