View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10859_low_5 (Length: 396)
Name: NF10859_low_5
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 33618541 - 33618165
Alignment:
| Q |
1 |
agacaaaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33618541 |
agacaaaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctaca |
33618442 |
T |
|
| Q |
101 |
atgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgtt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618441 |
atattgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgtt |
33618342 |
T |
|
| Q |
201 |
gcactgatttcgcaatttctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618341 |
gcactgatttcgcaatttctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttg |
33618242 |
T |
|
| Q |
301 |
ctctatcttaccacgttctaccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcacagctgcag |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33618241 |
ctctatcttaccacgttctaccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcacagctgcag |
33618165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 33609366 - 33608998
Alignment:
| Q |
1 |
agacaaaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctaca |
100 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| |||||| ||||| |||| || |||||||| || |||||||| |||||||| || || || |
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|
| T |
33609366 |
agacacaaggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacg |
33609267 |
T |
|
| Q |
101 |
atgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgtt |
200 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
33609266 |
atgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatactccctttttaatatggttttaaagggctcttggt |
33609167 |
T |
|
| Q |
201 |
gcactgatttcgcaatttctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttg |
300 |
Q |
| |
|
|| ||||| |||| |||| | |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
33609166 |
taaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactgaggatcctctaattttgcgtaaggcttttttagcttg |
33609067 |
T |
|
| Q |
301 |
ctctatcttaccacgttctaccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcac |
369 |
Q |
| |
|
||| | ||||||||||| || |||| ||| ||||| || | |||||||||||||| ||||||||||| |
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|
| T |
33609066 |
ctcgagtttaccacgttcaactaagctgttgggtgtgtccgatatgaggaaggaaccaattgtcatcac |
33608998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 33627737 - 33627380
Alignment:
| Q |
20 |
ccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagct |
119 |
Q |
| |
|
||||||||||| || |||||||||| | | |||||| || |||| ||| ||||||||| |||||||| || || | ||||||||||||||||| | |
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|
| T |
33627737 |
ccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttgatccctgtaactt |
33627638 |
T |
|
| Q |
120 |
gttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttc |
219 |
Q |
| |
|
|||| |||||||||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
33627637 |
gttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagtgattttgcaatttt |
33627538 |
T |
|
| Q |
220 |
tgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttct |
319 |
Q |
| |
|
||| || | ||||||||||||||||| ||||||||||||| || |||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |
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|
| T |
33627537 |
tgttgacctaataagttcttctaactcaggttcaatatcaatggaagatcctctgattttgtgtaatgcttttttggcttgctctatcttaccacgttcg |
33627438 |
T |
|
| Q |
320 |
accaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcacagctgcag |
377 |
Q |
| |
|
|| |||| ||| ||||| || || |||||||||| ||| ||||| || |||||||||| |
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|
| T |
33627437 |
actaagctgttgggtgtgtcagttatgaggaaggcaccaattgtaattacagctgcag |
33627380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 33588632 - 33588282
Alignment:
| Q |
19 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
118 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33588632 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33588533 |
T |
|
| Q |
119 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
218 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | ||||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33588532 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctctaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33588433 |
T |
|
| Q |
219 |
ctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttc |
318 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||| || |||||||| ||||| | || |||| ||||||| |||||||| |||||||| |
|
|
| T |
33588432 |
ctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttc |
33588333 |
T |
|
| Q |
319 |
taccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcac |
369 |
Q |
| |
|
||||||| | | ||||| |||| |||||||||| ||| ||||||||||| |
|
|
| T |
33588332 |
aaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcac |
33588282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 33595804 - 33595454
Alignment:
| Q |
19 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
118 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33595804 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33595705 |
T |
|
| Q |
119 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
218 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33595704 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33595605 |
T |
|
| Q |
219 |
ctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttc |
318 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||| || |||||||| ||||| | || |||| ||||||| |||||||| |||||||| |
|
|
| T |
33595604 |
ctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttc |
33595505 |
T |
|
| Q |
319 |
taccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcac |
369 |
Q |
| |
|
||||||| | | ||||| |||| |||||||||| ||| ||||||||||| |
|
|
| T |
33595504 |
aaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcac |
33595454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 33602935 - 33602585
Alignment:
| Q |
19 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
118 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33602935 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33602836 |
T |
|
| Q |
119 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
218 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33602835 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33602736 |
T |
|
| Q |
219 |
ctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttc |
318 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||| || |||||||| ||||| | || |||| ||||||| |||||||| |||||||| |
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|
| T |
33602735 |
ctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttc |
33602636 |
T |
|
| Q |
319 |
taccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcac |
369 |
Q |
| |
|
||||||| | | ||||| |||| |||||||||| ||| ||||||||||| |
|
|
| T |
33602635 |
aaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcac |
33602585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 73 - 318
Target Start/End: Complemental strand, 33622658 - 33622413
Alignment:
| Q |
73 |
aaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctt |
172 |
Q |
| |
|
||||||||| |||||||| || || ||||||||| ||||||||| |||| |||| ||| |||||| || ||||| | | |||||| |||| || ||| |
|
|
| T |
33622658 |
aaagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaatctgaggttgatactctctt |
33622559 |
T |
|
| Q |
173 |
tttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctc |
272 |
Q |
| |
|
|||| ||||||||||||||| |||| || |||||||| |||||| ||| |||| ||| ||||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
33622558 |
tttagtatggttttaaagggatctttttttactgattttacaatttgtgttgacttaatatgttcttcaaactcaggttcaatatcaatggaggatcctt |
33622459 |
T |
|
| Q |
273 |
taattttgcgtaaggcttgtttggcttgctctatcttaccacgttc |
318 |
Q |
| |
|
| ||| |||||||||||| || ||| |||||||||| ||||||| |
|
|
| T |
33622458 |
tgattatgcgtaaggctttttcagctctctctatcttatcacgttc |
33622413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 33563045 - 33562979
Alignment:
| Q |
101 |
atgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatatt |
167 |
Q |
| |
|
||||||||||| || || ||||| |||| ||| || |||| ||| |||||||||||||||||||||| |
|
|
| T |
33563045 |
atgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatatt |
33562979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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