View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_6 (Length: 339)
Name: NF10859_low_6
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 53984567 - 53984255
Alignment:
| Q |
20 |
gtatggggtatagtaggatttaattattggcactagactaaaaaggggtcgaatgaatcttaaaagtaatttctctaaccaccaaaaaataatccatgtt |
119 |
Q |
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| T |
53984567 |
gtatggggtatagtaggatttaattattggcactagactaaaaaggggtcgaatgaatcttaaaagtaatttctctaagcaccaaaaaataatccatgtt |
53984468 |
T |
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| Q |
120 |
ttatatttaggctagagaaagaaatcgacccacaaaaggggtgaacttgcagggtttctttccttccgggtgtggagggaataatattatgtttgtaa-n |
218 |
Q |
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| T |
53984467 |
ttatatttaggctagagaaagaaatcgacccacaaaaggggtgaacttgcagggtttctttccttccgggtgtggagggaataatattatgtttgtaatt |
53984368 |
T |
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| Q |
219 |
nnnnnnnnnnnnnnnnnncaacatgcatgatttttactcacgtctcctattattctcatcatatatcttacttaatttcctccctttttggtttcttttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984367 |
tttttttttttactttttcaacatgcatgatttttactcacgtctcctattattctcatcatatatcttacttaatttcctccctttttggtttcttttt |
53984268 |
T |
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| Q |
319 |
agccattcttctc |
331 |
Q |
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||||||||||||| |
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| T |
53984267 |
agccattcttctc |
53984255 |
T |
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