View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_7 (Length: 331)
Name: NF10859_low_7
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 56436862 - 56436556
Alignment:
| Q |
17 |
agtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttcacaataacatcaggtgg |
116 |
Q |
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| T |
56436862 |
agtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttcacaataacatcaggtgg |
56436763 |
T |
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| Q |
117 |
accccccttcatctccataacagtgcgagccatctgttgaacgctgtcatcggagctgacgtcaacattgaggaagagatgattatgattatttggaagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56436762 |
accccccttcatctccataacagtgcgagccatctgttgaacgctgtcattggagctgacgtcaacattgaggaagagatgattatgattatttggaagt |
56436663 |
T |
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| Q |
217 |
aaaagagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccctaccaattc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56436662 |
aaaagagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccctaccaattc |
56436563 |
T |
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| Q |
317 |
ctttgct |
323 |
Q |
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||||||| |
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| T |
56436562 |
ctttgct |
56436556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 26560748 - 26560811
Alignment:
| Q |
17 |
agtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
80 |
Q |
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| T |
26560748 |
agttggtatccatcaccaaatcaaactcttcagacggaacctcccacatcttgttgttcttgtt |
26560811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 26562866 - 26562803
Alignment:
| Q |
17 |
agtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
80 |
Q |
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|||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
26562866 |
agttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgtt |
26562803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 24890207 - 24890270
Alignment:
| Q |
17 |
agtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
80 |
Q |
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|||| |||||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||||| |
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| T |
24890207 |
agttggtatccatcaccgaatcaaactcttcagagggaacctcccacatcttactgttcttgtt |
24890270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 24890437 - 24890498
Alignment:
| Q |
247 |
tgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccct |
308 |
Q |
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||| |||||||||| || ||||||||||| || ||||| ||||||||||| ||||||||||| |
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| T |
24890437 |
tgatcacgagaacatccgataatggtgtggccgcgattagccaattcaattgcaagagccct |
24890498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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