View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_8 (Length: 296)
Name: NF10859_low_8
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 44344565 - 44344725
Alignment:
| Q |
1 |
ccatgtcgtcaatgacctatgttatgcacgtgttacattttagttccatttgattttatttgatttgatttggttagctacactgaaataaacaatttcc |
100 |
Q |
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| T |
44344565 |
ccatgtcgtcaatgacctatgttatgcacgtgttacattttagttccatttgattttatttgatttgagttggttagctacactgaaataaacaatttct |
44344664 |
T |
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| Q |
101 |
atgtagattaactttttataacggatcttgctaacaaatacatttaggacagtagttaagg |
161 |
Q |
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| T |
44344665 |
atgtagattagctttttataatgggtctagctaacaaatgcacttaggacagtagttaagg |
44344725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 44344792 - 44344840
Alignment:
| Q |
228 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaa |
276 |
Q |
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|||||||||||||| | ||||||||||| ||||||||| |||||||||| |
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| T |
44344792 |
tgaatacacaacttccgaaataaatgtttaactttaaacttcttatcaa |
44344840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 31752759 - 31752807
Alignment:
| Q |
228 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaa |
276 |
Q |
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| T |
31752759 |
tgaatacacaacttccaaaataaaccttttactttaaatttcttatcaa |
31752807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 46299495 - 46299447
Alignment:
| Q |
228 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaa |
276 |
Q |
| |
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| T |
46299495 |
tgaatacataaatttcaaaataaatttttaactttaaatttcttatcaa |
46299447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 44529297 - 44529241
Alignment:
| Q |
228 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaaatgcccta |
284 |
Q |
| |
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||||||||||||||| || ||||| ||| |||||||| ||||||||||||| |||| |
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| T |
44529297 |
tgaatacacaacttttaagataaaacttccactttaaacttcttatcaaatgtccta |
44529241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 9050027 - 9049971
Alignment:
| Q |
228 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaaatgcccta |
284 |
Q |
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|||||||||||||||||||||||| ||| | |||||| || ||||||| ||||||| |
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| T |
9050027 |
tgaatacacaactttcaaaataaactttctattttaaactttttatcaagtgcccta |
9049971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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