View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10859_low_9 (Length: 295)
Name: NF10859_low_9
Description: NF10859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10859_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 1167229 - 1167498
Alignment:
| Q |
11 |
cagagacatgcaatatttttaggcgttcaattgtcttctggttcttagttagggtttgcaagacagcaagagtttgtggtaatataaacaaaaatgcatg |
110 |
Q |
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| T |
1167229 |
cagagacatgcaatatttttaggcgttcaattgtcttctggttcttagttagggtttgcaagacagcaagagtttgtggtaatataaacaaaaatgcata |
1167328 |
T |
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| Q |
111 |
aaagtaaggaaactttacaagctaaaagacttgtttgggttagacttcattaaatactcctaaattgtatctttttgatcgattatataattttatattt |
210 |
Q |
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| T |
1167329 |
aaagtaaggaaactttacaagctaaaagacttatttgggttagacttcattaaatactcctaaattgtatctttttgatcgattatataattttatattt |
1167428 |
T |
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| Q |
211 |
tcaattatatcttcacttgtcgcttttggttttcgtgtccgtaaaacgaagagaaatctatcgtactttt |
280 |
Q |
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| T |
1167429 |
tcaattatatcttcacttgtcgcttttggttttcgtgtccgtgaaacgacgagaaatctatcgtactttt |
1167498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 3923984 - 3924029
Alignment:
| Q |
186 |
tgatcgattatataattttatattttcaattatatcttcacttgtc |
231 |
Q |
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| T |
3923984 |
tgatcaattatatacttttagattttcaattatatctccacttgtc |
3924029 |
T |
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