View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_high_5 (Length: 316)
Name: NF10860_high_5
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 48 - 302
Target Start/End: Complemental strand, 14250441 - 14250188
Alignment:
| Q |
48 |
tataaagacttggtcacataattaaaactatgcaaaaagtgtgctgttttgatttctcttttggatctcttaacacggatttagaaattaacagaaactg |
147 |
Q |
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| T |
14250441 |
tataaagacttggtcacataattaaaactatgcaaaaagtgtgccgttttgatttctcttttggatctcttaacacg-atttaaaaatcaacagaaactg |
14250343 |
T |
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| Q |
148 |
aaaaacagtcgaacttaccactttaaggggaggaatgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacg |
247 |
Q |
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| T |
14250342 |
aaaaacaatcgaacttaccactttaaggggaggaatgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacg |
14250243 |
T |
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| Q |
248 |
cgtgtttttaccgactgcaagaagaaacattaaaagtgttacactataccttttt |
302 |
Q |
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| T |
14250242 |
cgtgtttttaccgactgcaagaagaaacattaaaagtgttacactataccttttt |
14250188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 4988168 - 4988278
Alignment:
| Q |
159 |
aacttaccactttaaggggaggaatgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacgcgtgtttttac |
258 |
Q |
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||||||| | |||||| ||||| |||||||| || ||||| |||||||| |||||||||||||| ||||| ||||||||| ||||||| || || || || |
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| T |
4988168 |
aacttactattttaagaggagggatgttctcagggattgacagcattaggctttcattccaaacaggatttaaattgttctttataacacgcgtcttcac |
4988267 |
T |
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| Q |
259 |
cgactgcaaga |
269 |
Q |
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| T |
4988268 |
cgactgcaaga |
4988278 |
T |
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