View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_1 (Length: 547)
Name: NF10860_low_1
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 165 - 533
Target Start/End: Complemental strand, 51875011 - 51874643
Alignment:
| Q |
165 |
ttcataccaccaccattctaaacaaacagaaacacacgacggaatcgaaagcgcaagtaacgaagaccaacctttgagacaatcaatactaggaaaaacc |
264 |
Q |
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| T |
51875011 |
ttcataccaccaccattctaaacaaacagaaacacacgacggaatcgaaagcgcaagtaacgaagaccaacctttgagacaatcaatactaggaaaaacc |
51874912 |
T |
|
| Q |
265 |
catgaatctttataaacacgtgagaaaaatacaaaagatgaaaggaaaatcaaaaggttgagattgaaccaaatcattgctattgccacccctgcaacac |
364 |
Q |
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| T |
51874911 |
catgaatctttataaacacgtgagaaaaatacaaaagatgaaaggaaaatcaaaaggttgagattgaaccaaatcattgctattgccacccctgcaacac |
51874812 |
T |
|
| Q |
365 |
ccattttgaaatggatcacaagaagaaaattcaaaggaacatgaagagtaacagatatggcggaacaatacgttaatggcaatgttatattttgtgttct |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51874811 |
ccattttgaaatggatcacaagaagaaaattcaaaggaacatgaagagtaacagatatggctgaacaatacgttaatggcaatgttatattttgtgttct |
51874712 |
T |
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| Q |
465 |
taggtaaatacgaagaggatgaagaaacgagagaaagaaaagatctggtagtgaaaagagaatgaaagt |
533 |
Q |
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| T |
51874711 |
taggtaaatacgaagaggatgaagaaacgagagaaagaaaagatctggtagtgaaaagagaatgaaagt |
51874643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 9862149 - 9862338
Alignment:
| Q |
7 |
gcctgtcctgaccatagcgaatgaccgattcttgttgtcaaagatgcactaagtggatatggaaagatatacagaaaaccaagtgtttgaataagtatcc |
106 |
Q |
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| T |
9862149 |
gcctgtcctgaccctaacgaatgaccgattcttgttgtcaaagatgcactaagtgaatatggaaagatatacagaaaaccaagtgtttgaataagtatcc |
9862248 |
T |
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| Q |
107 |
ccattgtagaaaccgaagtttgagggttacttaataaaccacaaagaaatagcattatttcataccaccaccattctaaacaaacagaaa |
196 |
Q |
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| T |
9862249 |
ccattgtagaaaccgaagtttgagggttacttaataaaccacaaagaaatagcattatttcataccaccaccattctaaacaaactgaaa |
9862338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 377
Target Start/End: Original strand, 28505822 - 28506033
Alignment:
| Q |
166 |
tcataccaccaccattctaaacaaacagaaacacacgacggaatcgaaagcgcaagtaacgaagaccaacctttgagacaatcaatactaggaaaaaccc |
265 |
Q |
| |
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||||||||||||||||| | |||||| ||||| || | ||||||| |||| ||| || || ||||| ||||| | ||||| | ||| || ||| || |
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| T |
28505822 |
tcataccaccaccattcgagacaaaccgaaacgcaagttggaatcgctagcgaaagcaatgaggaccaccctttaatgcaatctaaacttggtgaaatcc |
28505921 |
T |
|
| Q |
266 |
atgaatctttataaacacgtgagaaaaatacaaaagatgaaaggaaaatcaaaaggttgagattgaaccaaatcattgctattgccacccctgcaacacc |
365 |
Q |
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|||| | ||||||||||| ||||| ||| |||||||||||| ||||| | |||||| | ||| | ||| ||||||||||| ||||||||||| || |
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| T |
28505922 |
atgactttttataaacactagagaagtataaaaaagatgaaagtaaaataacaaggtttaaatttgtcaaaaccattgctattgacacccctgcaatccc |
28506021 |
T |
|
| Q |
366 |
cattttgaaatg |
377 |
Q |
| |
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||||| |||||| |
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| T |
28506022 |
catttggaaatg |
28506033 |
T |
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