View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10860_low_10 (Length: 291)
Name: NF10860_low_10
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 1857879 - 1857617
Alignment:
| Q |
18 |
aaaatttggtaagtgatttcttattattaaagaacacttccatctcagtctctacacttnnnnnnntcattaaaaactggattacatgcacacaacacaa |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1857879 |
aaaatttggtcagtgatttcttattattaaagaacacttccatctcagtctctacacttaaaaaaatcattaaaaactggattacatgcacacaacacaa |
1857780 |
T |
|
| Q |
118 |
tatataaaacaaattacattagaattata----aactgaaatttgtatgcaaaaactcctaaagtaatgaaatggaactgcattttgtcttctaacaatc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857779 |
tatataaaacaaattacattagaattatatataaactgaaatttgtatgcaaaaactcctaaagtaatgaaatggaactgcattttgtcttctaacaatc |
1857680 |
T |
|
| Q |
214 |
atctgccatcatccaatgttatcagtacgtgatctttcaagctgtcatatctgatatctccat |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1857679 |
atctgccatcatccaatgttatcagtacgtgatctttcaagctgtcatatccgatatctccat |
1857617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 84 - 276
Target Start/End: Complemental strand, 1869408 - 1869215
Alignment:
| Q |
84 |
tcattaaaaactggattacatgcacacaacacaatatataaaacaaattacattagaattataaactgaaatttgtatgcaaaaactcctaaagtaatga |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1869408 |
tcattaaaaactggattacatgcacacaacacattatataaaacaaattacattagaattataaactgaaatttgtatgcaaaaactcctaaaataatga |
1869309 |
T |
|
| Q |
184 |
aatgg-aactgcattttgtcttctaacaatcatctgccatcatccaatgttatcagtacgtgatctttcaagctgtcatatctgatatctccat |
276 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
1869308 |
aatggttactgcattttgtcttataacaatcatctgccatcatccaatgctatcagtacatggtctttcaagctgtcatatccgatatctccat |
1869215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 41 - 276
Target Start/End: Complemental strand, 1843828 - 1843606
Alignment:
| Q |
41 |
ttattaaagaacacttccatctcagtctctacacttnnnnnnntcattaaaaactggattacatgcacacaacacaatatataaaacaaattacattaga |
140 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||| | |
|
|
| T |
1843828 |
ttattatagaacacttccatctcagtctctacacttatacaa-tcattaaaaactggattacatgcacacaa-------------ataaattaaattaaa |
1843743 |
T |
|
| Q |
141 |
attataaactgaaatttgtatgcaaaaactcctaaagtaatgaaatgga-actgcattttgtcttctaacaatcatctgccatcatccaatgttatcagt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
1843742 |
attataaactgaaatttgtatgcaaaaactcctaaaataatgaaatggttactgcattttgtcttaaaacaatcatctgccatcatccaatgctatcagt |
1843643 |
T |
|
| Q |
240 |
acgtgatctttcaagctgtcatatctgatatctccat |
276 |
Q |
| |
|
|| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
1843642 |
acatggtctttcaagctgtcatatccgatatctccat |
1843606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University