View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10860_low_11 (Length: 291)
Name: NF10860_low_11
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 41748031 - 41748292
Alignment:
| Q |
17 |
acaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgtggtgcagacgcgcttacgaatttcattcaacccacgacaaagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41748031 |
acaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgtggtgcagacgcgcttacgaatttcattcaacccacgacaaagaa |
41748130 |
T |
|
| Q |
117 |
ggttgttataaactccagcagcgatgaatgcgttgtttctgccacgtcagtacttcaatgttgtacttcttcctcagaaggaggtgaatccgtaacagta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41748131 |
ggttgttataaactccagcagcgatgaatgcgttgtttctgccacgtcagtacttcaatgttgtacttcttcctcagaaggaggtgaatccgtaacagta |
41748230 |
T |
|
| Q |
217 |
aaagacaatgttatcgttccaatgagtactgaatctttacgtgaatgtgaaaatgaatgttc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41748231 |
aaagacaatgttatcgttccaatgagtactgaatctttacgtgaatgtgaaaatgaatgttc |
41748292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University