View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10860_low_12 (Length: 286)
Name: NF10860_low_12
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 33120245 - 33120512
Alignment:
| Q |
2 |
atggaggagatggaaaaattacttgaagaaagaaaacttggtttcgatcttgggaacaaacctagttcataagttaagctcgagacgagtcctatatatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
33120245 |
atggaggagatggaaaaattacttgaagaaagaaaacttggtttcgatcttgggaacaaacctagctcataagttaagctcgtgacgagtcctatatatg |
33120344 |
T |
|
| Q |
102 |
tcatcgaaaaataaataaattgaacaaggccattatatatatgtatgtgtataccccatttcatatatgtacaatttaaataatgtaccaagttgaatcc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33120345 |
tcatcgaaaaataaataaattgaacaaggccat--tatatatgtacgtgtataccccatttcatatatgtacaatttaaataatgtaccaagttgaatac |
33120442 |
T |
|
| Q |
202 |
agtatattgctctatgttcttctttcatttatttataccgtgtacttcaagttaactaacatatgctttt |
271 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33120443 |
agcatattgctctatgttcttctttcatttatttataccgtgtacttcaagttaactaacatatgctttt |
33120512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University