View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_13 (Length: 284)
Name: NF10860_low_13
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 42960408 - 42960156
Alignment:
| Q |
16 |
aagacattccaattgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtgga |
115 |
Q |
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| T |
42960408 |
aagacattccaattgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtgga |
42960309 |
T |
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| Q |
116 |
tgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacag |
215 |
Q |
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| T |
42960308 |
tgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacag |
42960209 |
T |
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| Q |
216 |
cacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaa |
268 |
Q |
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| T |
42960208 |
cacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaa |
42960156 |
T |
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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 5504339 - 5504537
Alignment:
| Q |
28 |
ttgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgc |
127 |
Q |
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| T |
5504339 |
ttgaagcattcaagggaggctttgtcttgtccaaagttggcagtgcttggtcagtaggtgagctcaagttggtcaacaccaatgtgaatgaaaatcctgc |
5504438 |
T |
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| Q |
128 |
tgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaa |
226 |
Q |
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| T |
5504439 |
tgttaccttcaactacttcagtcatccatacgatttaaagcgctgcgtcgaagggatcagcatggccattaaagtagtccagtcagaacacttcacaaa |
5504537 |
T |
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