View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10860_low_14 (Length: 279)
Name: NF10860_low_14
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 38998732 - 38998501
Alignment:
| Q |
16 |
gaaaaggctttgtagtgttgaaggataaatacggaggaagactcaactatccctctattcatcatgttttaatttcttatgtcatgaccataacgtcaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38998732 |
gaaaaggctttgtagtgttgaaggataaatacggaggaagactcaactatccctctattcatcatgttttaatttcttatgtcatgaccataacgtcaat |
38998633 |
T |
|
| Q |
116 |
agattcatttactgatatttgttgatctgacaatgcattatatcatgataatctgttgttggttagttacagagtttgttaccttacgttactcttgcag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38998632 |
agattcatttactgatatttgttgatctgacaatgcattatatcatgataatctgttgttggttagttacagagtttgttaccttacgttactcttgcag |
38998533 |
T |
|
| Q |
216 |
ccgctgatatagcttatactatgttgttcatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38998532 |
ccgctgatatagcttatactatgttgttcatc |
38998501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 41046886 - 41046941
Alignment:
| Q |
99 |
atgaccataacgtcaatagattcatttactgatatttgttgatctgacaatgcatt |
154 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
41046886 |
atgacaataatgtcaatagattcatttcctgatatttgttgatctgactatgcatt |
41046941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University