View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_16 (Length: 278)
Name: NF10860_low_16
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5450885 - 5450643
Alignment:
| Q |
1 |
tccacattaccttccaacaaaccacacacccgatcaccaaagtatttattaaaacgggaaaacacaacctttgaacannnnnnncgtcgtcattatttat |
100 |
Q |
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| T |
5450885 |
tccacattactttccaacaaaccacacacccgatcaccaaagtatttattaaaacgggaaaacacaaactttgaacatttttttcatcgtcattatttat |
5450786 |
T |
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| Q |
101 |
tttcaaagtgatcgatattttctagatacttggtttggtgttctgtttttatgtttatgtgtttgtgttttgatcggatattggatggcatttcatatcc |
200 |
Q |
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| T |
5450785 |
tttcaaagtgattgatattttctggatacttggtttggtgttctgtttttatgtttatgtgtttatgttttgatcggatattggatgggatttcatattc |
5450686 |
T |
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| Q |
201 |
gtggcttgttttttgctagtttcataaacccgtaaagggtctg |
243 |
Q |
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| T |
5450685 |
gtggcttgttttttgctagtttcataaacccgtaaagggtctg |
5450643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 30943420 - 30943501
Alignment:
| Q |
38 |
caaagtatttattaaaacgggaaaacacaacctttgaacannnnnnncgtcgtcattatttattttcaaagtgatcgatatt |
119 |
Q |
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| T |
30943420 |
caaagtatttattaaaacgagaaaacacaacatttgaatatttttcttgtcatcattatttattttcaaagtcatcgatatt |
30943501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 45330985 - 45331064
Alignment:
| Q |
39 |
aaagtatttattaaaacgggaaaacacaacctttgaacannnnnnncgtcgtcattatttattttcaaagtgatcgatatt |
119 |
Q |
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| T |
45330985 |
aaagtatttattaaaacggggaagcacaacctttgaacatttttct-gtcatcattatatattttcaaagtcatcgatatt |
45331064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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