View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_17 (Length: 277)
Name: NF10860_low_17
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 33376933 - 33377185
Alignment:
| Q |
8 |
aagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagt |
107 |
Q |
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| T |
33376933 |
aagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagt |
33377032 |
T |
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| Q |
108 |
ggaagcttagagagtttgagttctgaaaaggatgatgatgttcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtt |
207 |
Q |
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| T |
33377033 |
ggaagcttagagagtttgagttctgaaaaggatgatgatgatcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtt |
33377132 |
T |
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| Q |
208 |
tggattctaaagaagttgaaaacgagttctcttttggtagcgaagatgatgag |
260 |
Q |
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| T |
33377133 |
tggattctaaagaagttgaaaacgagttctcttttggtagcgacgatgatgag |
33377185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 33383101 - 33383318
Alignment:
| Q |
29 |
aggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagt |
128 |
Q |
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| T |
33383101 |
aggtgattctcttaatcttgatgctgtctttaagcttaacaatgttttccattcaagtaacatcactagtttgatcagtggaagcttagagagtttgagt |
33383200 |
T |
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| Q |
129 |
tctgaaaaggatgatgat---gttcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtttggattctaaagaagttg |
225 |
Q |
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| T |
33383201 |
tctgaaaagggtgatgagaaagatcattactttgaaccaatttctataatgatgtttccaaaagcaaattatagttatagtttggattctaaagaagctg |
33383300 |
T |
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| Q |
226 |
aaaacgagttctcttttg |
243 |
Q |
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| T |
33383301 |
aaaatgaattctcttttg |
33383318 |
T |
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