View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_18 (Length: 258)
Name: NF10860_low_18
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 81 - 249
Target Start/End: Complemental strand, 15487900 - 15487732
Alignment:
| Q |
81 |
acagagaaatttcctatgaacatatcatataatttcctaggtatttagcaaaaaataataacattgtactacgaacttggtttaagctatatactatcaa |
180 |
Q |
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| T |
15487900 |
acagagaaatttcctatgaacatatcttataatttcctaggtatttagcaaaaattaataacattgtactacgaacttcgtttaagctatatactatcaa |
15487801 |
T |
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| Q |
181 |
atgaagggaaacaatgtaatttaacattaattatactaagttattgattatttttatttggaagaccta |
249 |
Q |
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| T |
15487800 |
atgaagggaaacaacgtaatttaacattaattatactaagttattgattatttttatttggaagaccta |
15487732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 15488008 - 15487948
Alignment:
| Q |
17 |
catccaccgccgtagagcaagcctaaactgcatcgaagatctatctaccttagttgttttatcta |
81 |
Q |
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| T |
15488008 |
catccaccgccgtagagcaagcctaaactgcatcgaaga----tctaccttagttgttttatcta |
15487948 |
T |
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