View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_2 (Length: 448)
Name: NF10860_low_2
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 121 - 438
Target Start/End: Complemental strand, 47088428 - 47088110
Alignment:
| Q |
121 |
atctggccagctaatgcaataatttacactcattctttgtcttagacagttagctgcccgtaatgtggaatactagaaaataacgtataacatgtttgtt |
220 |
Q |
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| T |
47088428 |
atctggccagctaatgcaataatttacactcattctttgtcttagacagttagctgcccgtaatgtggaatgctagaaaataacttataacatgtttgtt |
47088329 |
T |
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| Q |
221 |
ttattgttttgaaaacaaatgtgctacannnnnnnnnn-gaatccgagcctctgatacttttctgtcattggagctttggagtttgtctggttaggattc |
319 |
Q |
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| T |
47088328 |
ttattgttttgaaaacaaatgtgctacatttttttttttgaatccgagcctctgttacttttctgtcattggagctttggagtttgtctggttaggattc |
47088229 |
T |
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| Q |
320 |
tctctctctaacacagacgtgtctacccacctacacacacaacatagctcagcagttgtgtagtgaatgtgattttagcacataactaatgcttccttta |
419 |
Q |
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| T |
47088228 |
tctctctctaacacagacgtgtctacccacctacacacacaacatagctcagcagttgtgtagtgaatgtgattttagcacataactaatgcttccttta |
47088129 |
T |
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| Q |
420 |
agtgtgaggttaatctctg |
438 |
Q |
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| T |
47088128 |
agtgtgaggttaatctctg |
47088110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 47088566 - 47088458
Alignment:
| Q |
18 |
aatacatgatctatatttcatgtcattacatactattgtatcttggtaatgtaattttatagcgtgaacttaagtagcttctgcttgtgatgttaaacaa |
117 |
Q |
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| T |
47088566 |
aatacatgatctatatttcatgtcattacatactattgtatcttggtaatgtaattttatagtgtgaacttaagtagcttctgcttgtgatgttaaacaa |
47088467 |
T |
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| Q |
118 |
aacatctgg |
126 |
Q |
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| T |
47088466 |
aacatctgg |
47088458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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