View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_22 (Length: 235)
Name: NF10860_low_22
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34877399 - 34877258
Alignment:
| Q |
1 |
cagaaatagtatattttgattttgagtggtaaaaaccaaatttgtctctataaattgtttaaaatgctgcaactaattagtttctgacattaacaaaaat |
100 |
Q |
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| T |
34877399 |
cagaaatagtatattttgattttgagtggtaaaaaccaaatttgtctctataa-ttgtttaaaatgctgcaactaattagtttctgacattaacaaaaat |
34877301 |
T |
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| Q |
101 |
actcctttaccataattgtattggtaaaaagaaaaaaacataattg |
146 |
Q |
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| T |
34877300 |
actcctttaccataattgtattggtaaa---aaaaaaacataattg |
34877258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 34877265 - 34877214
Alignment:
| Q |
169 |
cataattgttatttgtattagtaatgttaacgtgataattaagtgagtgaat |
220 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34877265 |
cataattgatatttgtattagtaatgttaacgtgataattaagtgagtgaat |
34877214 |
T |
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