View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_3 (Length: 407)
Name: NF10860_low_3
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 50 - 285
Target Start/End: Original strand, 16203902 - 16204139
Alignment:
| Q |
50 |
gttggacttgaaggtctttgtctttgaacagaatctatgtgatggacac--acactaacccctattaattaagtctacttcttatcaattaattaatgtg |
147 |
Q |
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| T |
16203902 |
gttggacttgaaggtctttgtctttgaacagaatctatgtgatggacacacacactaatccctattaattaagtctacttcttatcaattaattaatgtg |
16204001 |
T |
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| Q |
148 |
ctcgtctataactcacggtcactttgtacaataggactttttattctaatttttaaaaaatcaaatgattatatagacactaaagtaacatatggca-tg |
246 |
Q |
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| T |
16204002 |
ctcttctataactcacggtcactttgtacaataggagtttttattttattttttaaaaaatcaaatgattatatagacactaaaataacata-ggcagtg |
16204100 |
T |
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| Q |
247 |
aaagataattacaagaaagtcctaataaaaaagacatat |
285 |
Q |
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| T |
16204101 |
aaagataattacacgaaagtcctaatcaaaaagacatat |
16204139 |
T |
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