View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10860_low_4 (Length: 376)

Name: NF10860_low_4
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10860_low_4
NF10860_low_4
[»] chr8 (23 HSPs)
chr8 (20-355)||(38871549-38871884)
chr8 (215-368)||(3395837-3395990)
chr8 (303-368)||(18441390-18441455)
chr8 (298-368)||(22547497-22547567)
chr8 (305-367)||(41858073-41858135)
chr8 (240-313)||(22577635-22577708)
chr8 (305-365)||(26451541-26451601)
chr8 (209-320)||(18438573-18438684)
chr8 (288-367)||(37779696-37779773)
chr8 (209-320)||(7168027-7168138)
chr8 (305-368)||(41274653-41274716)
chr8 (209-320)||(41858144-41858255)
chr8 (214-310)||(43690067-43690162)
chr8 (209-320)||(41855307-41855418)
chr8 (209-314)||(18441470-18441575)
chr8 (272-320)||(28646270-28646318)
chr8 (272-320)||(28650854-28650902)
chr8 (310-368)||(24860448-24860506)
chr8 (210-320)||(42602400-42602510)
chr8 (305-367)||(42602521-42602583)
chr8 (279-320)||(35940448-35940489)
chr8 (209-262)||(40077331-40077384)
chr8 (286-314)||(42605263-42605291)
[»] chr4 (38 HSPs)
chr4 (209-368)||(34154377-34154536)
chr4 (213-314)||(955735-955836)
chr4 (253-368)||(39588075-39588190)
chr4 (286-367)||(6283417-6283498)
chr4 (209-368)||(56304816-56304974)
chr4 (299-368)||(34530744-34530813)
chr4 (209-320)||(21472507-21472618)
chr4 (305-368)||(56138313-56138376)
chr4 (298-368)||(51429278-51429348)
chr4 (211-320)||(49572923-49573032)
chr4 (305-368)||(44561279-44561342)
chr4 (209-320)||(29700325-29700436)
chr4 (305-368)||(958543-958606)
chr4 (303-368)||(42885508-42885575)
chr4 (303-366)||(243296-243359)
chr4 (209-320)||(37959743-37959854)
chr4 (209-310)||(51426476-51426577)
chr4 (209-314)||(51644502-51644608)
chr4 (209-314)||(4768617-4768722)
chr4 (305-365)||(1041996-1042056)
chr4 (316-367)||(28081530-28081582)
chr4 (209-313)||(49422082-49422181)
chr4 (213-320)||(958617-958723)
chr4 (209-320)||(4979940-4980051)
chr4 (287-334)||(37865185-37865232)
chr4 (306-355)||(4786296-4786345)
chr4 (271-320)||(34151615-34151664)
chr4 (274-318)||(24414839-24414883)
chr4 (209-312)||(44051123-44051226)
chr4 (209-312)||(44561361-44561464)
chr4 (240-314)||(18578619-18578693)
chr4 (305-351)||(29700268-29700314)
chr4 (215-320)||(33383750-33383855)
chr4 (272-312)||(9473692-9473732)
chr4 (326-362)||(11287557-11287593)
chr4 (272-312)||(17342144-17342184)
chr4 (303-367)||(21017951-21018018)
chr4 (265-313)||(24417446-24417494)
[»] chr3 (50 HSPs)
chr3 (209-368)||(19454300-19454459)
chr3 (209-320)||(29929365-29929476)
chr3 (209-320)||(29978519-29978630)
chr3 (209-320)||(30256026-30256137)
chr3 (305-368)||(34694383-34694446)
chr3 (305-367)||(55207613-55207675)
chr3 (209-314)||(43571714-43571819)
chr3 (305-368)||(43568927-43568990)
chr3 (305-368)||(51696523-51696586)
chr3 (305-367)||(41803059-41803121)
chr3 (305-367)||(51402348-51402410)
chr3 (209-313)||(7247890-7247994)
chr3 (209-320)||(41579747-41579858)
chr3 (305-368)||(43476253-43476316)
chr3 (305-368)||(45101797-45101860)
chr3 (305-368)||(55385198-55385261)
chr3 (209-319)||(45101872-45101982)
chr3 (307-368)||(7245155-7245216)
chr3 (316-365)||(41137780-41137829)
chr3 (305-368)||(13896825-13896888)
chr3 (309-368)||(41577140-41577199)
chr3 (305-368)||(52570515-52570578)
chr3 (305-358)||(24703374-24703427)
chr3 (305-368)||(2271261-2271325)
chr3 (303-368)||(34648151-34648218)
chr3 (305-368)||(36134384-36134448)
chr3 (213-320)||(46344880-46344987)
chr3 (305-368)||(49609444-49609507)
chr3 (307-368)||(4004751-4004813)
chr3 (316-368)||(49219740-49219792)
chr3 (209-320)||(28611123-28611234)
chr3 (210-312)||(66841-66942)
chr3 (319-368)||(2426559-2426608)
chr3 (240-313)||(2745235-2745308)
chr3 (209-262)||(41577014-41577067)
chr3 (253-314)||(50216883-50216944)
chr3 (213-314)||(55207692-55207793)
chr3 (209-321)||(11380380-11380492)
chr3 (209-320)||(29918364-29918475)
chr3 (209-320)||(29967517-29967628)
chr3 (209-312)||(52570597-52570699)
chr3 (209-287)||(43568865-43568942)
chr3 (298-367)||(46402410-46402483)
chr3 (247-320)||(41802975-41803048)
chr3 (213-314)||(42804398-42804499)
chr3 (209-262)||(42807681-42807734)
chr3 (209-310)||(55267380-55267481)
chr3 (267-315)||(20366189-20366237)
chr3 (272-312)||(50604451-50604491)
chr3 (213-313)||(51402428-51402528)
[»] chr7 (33 HSPs)
chr7 (272-368)||(21188375-21188471)
chr7 (305-367)||(30355189-30355251)
chr7 (252-368)||(34139879-34139995)
chr7 (209-320)||(30355262-30355373)
chr7 (209-320)||(9494829-9494940)
chr7 (209-320)||(36392064-36392175)
chr7 (305-368)||(41047838-41047901)
chr7 (305-368)||(46863293-46863356)
chr7 (305-366)||(28980123-28980184)
chr7 (209-314)||(46863373-46863478)
chr7 (305-368)||(28115481-28115544)
chr7 (305-368)||(36394887-36394950)
chr7 (209-312)||(48314613-48314715)
chr7 (209-314)||(10705187-10705292)
chr7 (307-368)||(42682057-42682118)
chr7 (305-368)||(17838711-17838775)
chr7 (212-320)||(47060869-47060976)
chr7 (305-368)||(40587722-40587785)
chr7 (209-313)||(34622438-34622542)
chr7 (305-365)||(43686859-43686919)
chr7 (316-368)||(48269713-48269765)
chr7 (209-320)||(41049212-41049322)
chr7 (209-260)||(48269620-48269671)
chr7 (310-368)||(45364169-45364227)
chr7 (205-307)||(48316296-48316398)
chr7 (209-320)||(42681933-42682044)
chr7 (216-312)||(46860457-46860553)
chr7 (209-320)||(27453617-27453728)
chr7 (209-320)||(41047717-41047827)
chr7 (213-274)||(41623884-41623945)
chr7 (252-320)||(34623403-34623471)
chr7 (272-320)||(39460555-39460603)
chr7 (331-367)||(48316259-48316295)
[»] chr1 (43 HSPs)
chr1 (283-368)||(14174860-14174945)
chr1 (279-368)||(27487615-27487704)
chr1 (215-368)||(35526984-35527141)
chr1 (209-320)||(41804056-41804167)
chr1 (305-368)||(29763168-29763231)
chr1 (305-368)||(42572706-42572769)
chr1 (209-320)||(46973143-46973254)
chr1 (209-320)||(11183125-11183236)
chr1 (302-368)||(44596893-44596959)
chr1 (305-367)||(49927451-49927513)
chr1 (316-368)||(26637205-26637257)
chr1 (209-320)||(13173775-13173885)
chr1 (209-320)||(18975143-18975254)
chr1 (209-312)||(19053998-19054101)
chr1 (209-320)||(46141721-46141832)
chr1 (298-368)||(49426741-49426812)
chr1 (209-310)||(35521553-35521654)
chr1 (316-368)||(13972134-13972186)
chr1 (305-368)||(6434809-6434872)
chr1 (209-312)||(6437570-6437673)
chr1 (213-319)||(36908521-36908627)
chr1 (305-355)||(49395664-49395714)
chr1 (247-320)||(13178155-13178228)
chr1 (209-320)||(23276131-23276242)
chr1 (213-320)||(36076581-36076687)
chr1 (317-365)||(4208454-4208502)
chr1 (304-368)||(13147556-13147620)
chr1 (209-320)||(36072309-36072419)
chr1 (316-368)||(51269010-51269062)
chr1 (209-320)||(13972003-13972112)
chr1 (305-368)||(29435034-29435096)
chr1 (209-319)||(49857873-49857981)
chr1 (213-320)||(51666662-51666768)
chr1 (209-320)||(26633469-26633577)
chr1 (219-314)||(27485008-27485103)
chr1 (316-368)||(36908642-36908698)
chr1 (209-320)||(49924795-49924906)
chr1 (272-314)||(4516033-4516075)
chr1 (272-314)||(27115852-27115894)
chr1 (240-320)||(19499135-19499213)
chr1 (319-368)||(29709260-29709309)
chr1 (331-368)||(41779766-41779803)
chr1 (326-362)||(24364680-24364716)
[»] chr5 (26 HSPs)
chr5 (286-367)||(42865754-42865835)
chr5 (209-320)||(34682196-34682307)
chr5 (209-320)||(18538358-18538469)
chr5 (209-320)||(20192292-20192403)
chr5 (305-368)||(542739-542802)
chr5 (305-368)||(18307315-18307378)
chr5 (305-364)||(35564322-35564381)
chr5 (305-368)||(25497572-25497635)
chr5 (209-320)||(20200171-20200282)
chr5 (305-368)||(11346068-11346132)
chr5 (209-312)||(3603179-3603282)
chr5 (305-355)||(20192414-20192464)
chr5 (247-320)||(18307231-18307304)
chr5 (209-314)||(18310050-18310155)
chr5 (305-368)||(8537226-8537290)
chr5 (305-368)||(3600398-3600461)
chr5 (234-320)||(8702221-8702307)
chr5 (209-314)||(19228675-19228780)
chr5 (209-314)||(24053119-24053224)
chr5 (329-368)||(1401389-1401428)
chr5 (214-320)||(38968039-38968145)
chr5 (209-262)||(3600275-3600328)
chr5 (274-314)||(6267997-6268038)
chr5 (283-320)||(24050040-24050077)
chr5 (283-320)||(25497524-25497561)
chr5 (247-320)||(42539396-42539469)
[»] chr6 (22 HSPs)
chr6 (272-368)||(29061298-29061394)
chr6 (209-318)||(13479665-13479774)
chr6 (305-368)||(12783906-12783969)
chr6 (298-368)||(32034341-32034411)
chr6 (307-368)||(29065791-29065852)
chr6 (307-368)||(29074804-29074865)
chr6 (307-368)||(29079568-29079629)
chr6 (307-368)||(29107377-29107438)
chr6 (305-368)||(13401547-13401610)
chr6 (212-320)||(35021286-35021394)
chr6 (213-320)||(13401429-13401536)
chr6 (227-314)||(23986010-23986097)
chr6 (209-314)||(18001153-18001257)
chr6 (209-261)||(32026044-32026096)
chr6 (209-320)||(18605984-18606094)
chr6 (209-320)||(23958829-23958940)
chr6 (209-320)||(29286168-29286279)
chr6 (227-309)||(12783991-12784073)
chr6 (204-314)||(13404661-13404771)
chr6 (325-362)||(26855976-26856013)
chr6 (325-368)||(17596765-17596808)
chr6 (252-312)||(7537180-7537240)
[»] chr2 (28 HSPs)
chr2 (305-368)||(2920465-2920528)
chr2 (305-368)||(24512228-24512291)
chr2 (305-367)||(41500184-41500246)
chr2 (209-320)||(2917622-2917733)
chr2 (209-320)||(19186686-19186797)
chr2 (306-368)||(40679546-40679608)
chr2 (303-368)||(29093780-29093842)
chr2 (209-320)||(35493364-35493475)
chr2 (305-368)||(43491170-43491233)
chr2 (213-320)||(45475383-45475490)
chr2 (215-320)||(34921782-34921886)
chr2 (305-368)||(2648178-2648241)
chr2 (305-368)||(39393098-39393161)
chr2 (213-320)||(41181380-41181487)
chr2 (305-363)||(10365746-10365804)
chr2 (298-367)||(28472141-28472214)
chr2 (209-312)||(8268780-8268883)
chr2 (317-368)||(16580559-16580610)
chr2 (227-314)||(43493286-43493373)
chr2 (247-314)||(45137462-45137529)
chr2 (306-368)||(26858175-26858237)
chr2 (316-368)||(34638212-34638261)
chr2 (272-314)||(36255019-36255061)
chr2 (210-320)||(43950265-43950374)
chr2 (272-320)||(23409524-23409572)
chr2 (213-320)||(9660078-9660185)
chr2 (213-314)||(12905492-12905593)
chr2 (273-317)||(35490683-35490727)
[»] scaffold0176 (1 HSPs)
scaffold0176 (252-368)||(804-920)
[»] scaffold0388 (1 HSPs)
scaffold0388 (213-318)||(11735-11840)
[»] scaffold0192 (1 HSPs)
scaffold0192 (305-368)||(18848-18911)
[»] scaffold0199 (1 HSPs)
scaffold0199 (305-368)||(12336-12400)
[»] scaffold0618 (1 HSPs)
scaffold0618 (283-320)||(3898-3935)
[»] scaffold0360 (1 HSPs)
scaffold0360 (214-314)||(7333-7433)
[»] scaffold0188 (1 HSPs)
scaffold0188 (209-260)||(27382-27433)
[»] scaffold0219 (2 HSPs)
scaffold0219 (272-313)||(20142-20183)
scaffold0219 (252-320)||(15685-15753)
[»] scaffold0169 (1 HSPs)
scaffold0169 (283-320)||(1680-1717)
[»] scaffold0201 (1 HSPs)
scaffold0201 (272-320)||(22405-22453)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 38871549 - 38871884
Alignment:
Q  20 atcggaacttttgatgcttaattcaaccctaccacagaacttttgatgcttgtgaactctaagaaatatgcatcgcaagataattttttatcttattggt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  38871549 atcggaacttttgatgcttaattcaaccctaccacagaacttttgatgcttgtgaactctaagaaatatgcatcgcaagataattttctatcttatcggt 38871648  T
Q  120 atgcttttgttgctgactttatcacaggtaattatagaacaaaggccagagctgcaacactccaggaccactgattaattgttgaagatttgttgttgac 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  38871649 atgcttttgttgctgactttatcacaggtaattatagaacaaaggccagagctgcaacactccaggaccactgattaattgttggagatttattgttgac 38871748  T
Q  220 acattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagg 319  Q
    |||||| ||||   ||||| |||||| ||||||||||||||||| ||||||||||||||||  |||||||||| ||||||  |||||||||||||  |||    
T  38871749 acatttcataagattgaggcacacaagtaaaatacgtttttgcttcattggtagttaattgtcgaggaattcataaatcgattgcagttaactgccaagg 38871848  T
Q  320 atcttctgctacaaatctggcaggagctctctcatc 355  Q
    ||||||||||||||||||||||||||||||||||||    
T  38871849 atcttctgctacaaatctggcaggagctctctcatc 38871884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 368
Target Start/End: Original strand, 3395837 - 3395990
Alignment:
Q  215 ttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    ||||||||||| |||| | ||||| |||||| ||||||| |||||||| || |  | |||||| ||| |||||||| |||||| |  |||||||||||||    
T  3395837 ttgacacatttcataaggttgaggcacacaagtaaaatatgtttttgccccctcagcagttaactgccgaggaatttaaaaattgattgcagttaactgc 3395936  T
Q  315 tgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
     |||||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  3395937 cgaggatcttctgctacaaatatggcagaaactctctcatccattattcatctc 3395990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 18441455 - 18441390
Alignment:
Q  303 gcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  18441455 gcagttaactgccgaggatcttctgctacaaatctggcagaaactctctcatccattattcatctc 18441390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 22547497 - 22547567
Alignment:
Q  298 cggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  22547497 cggctgcagttaactaccgaggatcttctactacaaatctggcagaagctctctcatcaattattcatctc 22547567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 41858135 - 41858073
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41858135 agttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 41858073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 22577635 - 22577708
Alignment:
Q  240 acacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactg 313  Q
    |||||||||||||||||||||| ||| | || |||||||||||||||||||||||||| || ||||||||||||    
T  22577635 acacaaataaaatacgtttttgttccctcggcagttaattgctgaggaattcaaaaattggttgcagttaactg 22577708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 26451541 - 26451601
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcat 365  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  26451541 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatctattattcat 26451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 18438573 - 18438684
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||| | |||||| ||||||||| |||||| || | || |||||| || |||||||||||| || |||||||||||    
T  18438573 ttgttgttgacacattgcataaggctgatgcacacaagtaaaatacgcttttgccccttcggcagttaactgttgaggaattcaataaccggctgcagtt 18438672  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  18438673 aactgccgagga 18438684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 37779696 - 37779773
Alignment:
Q  288 attcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||| |||||||||||||||  |||||| |||||||||||||||| ||| ||  ||||||||||||||||||||    
T  37779696 attcaaaaatgggctgcagttaactgtcgaggatattctgctacaaatctgacagaag--ctctcatccattattcatct 37779773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 7168027 - 7168138
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||||| |||||| || | |   ||||  ||| || ||||||||||| |||||||||||    
T  7168027 ttgttgttgacacatttcataaggctgaggcacacaagtaaaatacgattttgccccctcgactgttagctgccgaagaattcaaaaaccggctgcagtt 7168126  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  7168127 aactgccgagga 7168138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 41274653 - 41274716
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  41274653 agttaactgccgagaatcttctactataaatctggcagaagctctctcatccattattcatctc 41274716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 41858255 - 41858144
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||  ||||||  |||| | |||||||||||||||| || | || |||||| ||  || ||||||||||| |||||||||||    
T  41858255 ttgttgttgacacatttcatatggctgagaaacacgagtaaaatacgtttttgccccctcggcagttaactggcgaagaattcaaaaaccggctgcagtt 41858156  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  41858155 aactgccgagga 41858144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 43690162 - 43690067
Alignment:
Q  214 gttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaa 310  Q
    |||||||||||| |||| ||||| ||| |||| ||||||||||||||||||  | ||||||||| | |||| |||||  ||||||||||||||||||    
T  43690162 gttgacacatttcataaggctgaagtatacaagtaaaatacgtttttgctctctcggtagttaactactgatgaatt-taaaatcggctgcagttaa 43690067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 41855307 - 41855418
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||  ||||||  |||  | ||||||||||||||||  | | || |||||| ||  || |||||||||||||||||||||||    
T  41855307 ttgttgttgacacatttcatatggctgagaaacatgagtaaaatacgtttttgcctcctcggcagttaactgtcgaagaattcaaaaatcggctgcagtt 41855406  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  41855407 aactgccgagga 41855418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 18441575 - 18441470
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||  |||||| |||||||||||||||| || | || |||||| ||| ||| ||||||| || ||  || ||||    
T  18441575 ttgttgttgacacatttcataaggctgagacacacaagtaaaatacgtttttgccccctcggcagttaactgccgagaaattcaataaccgattgtagtt 18441476  T
Q  309 aactgc 314  Q
    ||||||    
T  18441475 aactgc 18441470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 28646318 - 28646270
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  28646318 agttaattgccgaggaatttaaaaatcggctgcagttaactgccgagga 28646270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 28650902 - 28650854
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  28650902 agttaattgccgaggaatttaaaaatcggctgcagttaactgccgagga 28650854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 24860448 - 24860506
Alignment:
Q  310 actgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||| ||||||||||||||| |||| || ||| |||||||||||| ||||||||||||    
T  24860448 actgcggaggatcttctgctataaatttgacagaagctctctcatctattattcatctc 24860506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 42602400 - 42602510
Alignment:
Q  210 tgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtta 309  Q
    |||||||||||| ||| |||  ||||||  |||| | |||||||| |||||| || || || |||||| ||| || ||||||||||| ||| ||||||||    
T  42602400 tgttgttgacacgtttcatatggctgagaaacacgagtaaaatacatttttgttctatcggcagttaactgccgaagaattcaaaaaccggatgcagtta 42602499  T
Q  310 actgctgagga 320  Q
    ||||| |||||    
T  42602500 actgccgagga 42602510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 42602521 - 42602583
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||| |||||||||||| |||||||||| ||  || | |||||||||||||||||||    
T  42602521 agttaactgccgaggatcttctgatacaaatctgacataagttgtctcatccattattcatct 42602583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 35940448 - 35940489
Alignment:
Q  279 tgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    ||||||||||||||| |||| ||||||||||||||| |||||    
T  35940448 tgctgaggaattcaataatcagctgcagttaactgccgagga 35940489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 40077384 - 40077331
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgc 262  Q
    ||||||||||||||||| |||| ||||||  |||| | ||||||||||||||||    
T  40077384 ttgttgttgacacatttgataaggctgagaaacacgagtaaaatacgtttttgc 40077331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 42605291 - 42605263
Alignment:
Q  286 gaattcaaaaatcggctgcagttaactgc 314  Q
    |||||||||||||||||||||||||||||    
T  42605291 gaattcaaaaatcggctgcagttaactgc 42605263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 209 - 368
Target Start/End: Complemental strand, 34154536 - 34154377
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||  ||||   |||||||| ||||||  |||| || |||||| ||| |||||||| ||||| |||||||||||    
T  34154536 ttgttgttgacacatttcataaggctgagaaacacgggtaaaatacatttttgtcccatcggcagttaactgccgaggaattaaaaaaccggctgcagtt 34154437  T
Q  309 aactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  34154436 aactgcagaggatcttctgctacaaatctggcagaagctctctcatctattattcatctc 34154377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 955735 - 955836
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||| |||||| ||||| |||||| ||||||||||||||||  | |||| |||||| ||||||||||||||||||||||||||||||||||    
T  955735 tgttgacacatttcataaagttgaggcacacaagtaaaatacgtttttgcctctttggcagttaactgctgaggaattcaaaaatcggctgcagttaact 955834  T
Q  313 gc 314  Q
    ||    
T  955835 gc 955836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 253 - 368
Target Start/End: Original strand, 39588075 - 39588190
Alignment:
Q  253 acgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctc 352  Q
    |||||||||| || | || |||||| ||| ||||||||  ||| ||| |||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  39588075 acgtttttgccccctcggcagttaactgccgaggaattagaaattcgactgcagttaactgccgaggatcttctgctacaaatatggcagaagctctctc 39588174  T
Q  353 atccattattcatctc 368  Q
    ||||||||||||||||    
T  39588175 atccattattcatctc 39588190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 6283498 - 6283417
Alignment:
Q  286 gaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  6283498 gaattcaaaaaccggctgcagttaactgccgaggatcttctgcttcaaatctggccgaagctctctcatccattattcatct 6283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 209 - 368
Target Start/End: Original strand, 56304816 - 56304974
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatc-ggctgcagt 307  Q
    ||||||||  ||||||| |||| | ||||  |||| | |||||||| ||||||| |||| || |||||| ||  |||||||| ||||||| |||||||||    
T  56304816 ttgttgttcccacatttgataaggttgagaaacacgagtaaaatacatttttgc-ccatcggcagttaactgtcgaggaatt-aaaaatctggctgcagt 56304913  T
Q  308 taactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  56304914 taattgccgaggattttctgctacaaatctggcagaagctctctcatccattattcatctc 56304974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 34530813 - 34530744
Alignment:
Q  299 ggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  34530813 ggctgcagttaactgccgaggatcttctgctacaaatttggcagaagctctctcatccattattcatctc 34530744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 21472618 - 21472507
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||  |||| | ||||||||||||||||  | | || |||||| ||| ||||||||||||||||||||||||||    
T  21472618 ttgttgttgacacatttcataaggctgagaaacacgagtaaaatacgtttttgccgcctcggcagttaactgccgaggaattcaaaaatcggctgcagtt 21472519  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  21472518 aactgccgagga 21472507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 56138313 - 56138376
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  56138313 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 56138376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 51429348 - 51429278
Alignment:
Q  298 cggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||||  |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  51429348 cggctgcagttaactgtcgaggatcttctgctacaaatctggaagaagctctctcatccattattcatctc 51429278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 49573032 - 49572923
Alignment:
Q  211 gttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaa 310  Q
    ||||||||||||||  |||| ||||||| |||||| |||||||||||||||| |||| |  |||||| ||  ||||||||||| ||||||||||||||||    
T  49573032 gttgttgacacattgcataaggctgaggcacacaagtaaaatacgtttttgccccatcgacagttaactgtcgaggaattcaataatcggctgcagttaa 49572933  T
Q  311 ctgctgagga 320  Q
    |||| |||||    
T  49572932 ctgccgagga 49572923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 44561342 - 44561279
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  44561342 agttaactgccgaggatcgtctgctacaaatctggcagaagctctctcatccattattcatctc 44561279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 29700436 - 29700325
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttg-ctccattggtagttaattgctgaggaattcaaaaatcggctgcagt 307  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||||| ||||| |||| | |  |||||| ||||||||||||||| || ||||||||||    
T  29700436 ttgttgttgacacatttcataaggctgaggcacacaagtaaaatacgcttttgtctcc-tcgacagttaactgctgaggaattcaataaccggctgcagt 29700338  T
Q  308 taactgctgagga 320  Q
    ||||||| |||||    
T  29700337 taactgccgagga 29700325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 958606 - 958543
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  958606 agttaactgccgaggatcttctgctacaaatccggcagaagctctctcatccattattcttctc 958543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 42885508 - 42885575
Alignment:
Q  303 gcagttaactgctgaggatcttctgctacaaa--tctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||| || ||||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  42885508 gcagttaactgccgatgatcttctgctacaaaaatctggcagaagctctctcatccattattcatctc 42885575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 243359 - 243296
Alignment:
Q  303 gcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatc 366  Q
    |||||||||||  |||||||||||| |||||||||||||| ||||||||||  |||||||||||    
T  243359 gcagttaactgtcgaggatcttctgttacaaatctggcagaagctctctcactcattattcatc 243296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 37959854 - 37959743
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||||| |||| | |||||||||||||| | || | || |||||| || ||||||||| || || | |||||||||    
T  37959854 ttgttgttgacacattacataaggctgaggcacacgagtaaaatacgtttttaccccctcggcagttaactgttgaggaatttaataaccagctgcagtt 37959755  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  37959754 aactgccgagga 37959743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 51426476 - 51426577
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccatt-ggtagttaattgctgaggaattcaaaaatcggctgcagt 307  Q
    ||||||||||||| ||| |||| ||| ||| |||||| ||||||||||||||| ||| || |  |||||| ||  |||||||||||||||||||||||||    
T  51426476 ttgttgttgacacgtttcataaggcttaggcacacaagtaaaatacgtttttg-tcctttcgacagttaactgtcgaggaattcaaaaatcggctgcagt 51426574  T
Q  308 taa 310  Q
    |||    
T  51426575 taa 51426577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 51644608 - 51644502
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggt-agttaattgctgaggaattcaaaaatcggctgcagt 307  Q
    |||||||||||||||||||| | ||||||| ||| || ||||||||  |||||| |  ||  | | |||||||  |||||||||||||||||||||||||    
T  51644608 ttgttgttgacacattttattaggctgaggcacataagtaaaataccattttgccctttttatcaattaattgtcgaggaattcaaaaatcggctgcagt 51644509  T
Q  308 taactgc 314  Q
    |||||||    
T  51644508 taactgc 51644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 4768617 - 4768722
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||| | |||||| |||||||   |||||| || | || |||||| ||| |||||||||||||   ||||||||||    
T  4768617 ttgttgttgacacatttcataaggctgatgcacacaagtaaaatataattttgccccctcggcagttaactgccgaggaattcaaaatctggctgcagtt 4768716  T
Q  309 aactgc 314  Q
    ||||||    
T  4768717 aactgc 4768722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 1041996 - 1042056
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcat 365  Q
    |||||||||| ||||||||||| ||||||||||||||  ||||||||||| |||| |||||    
T  1041996 agttaactgccgaggatcttctactacaaatctggcataagctctctcattcattgttcat 1042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 28081530 - 28081582
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatct 367  Q
    ||||||||||||||||||||||||||| | || ||||||||||||||||||||    
T  28081530 gaggatcttctgctacaaatctggcagaatctcctctcatccattattcatct 28081582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 313
Target Start/End: Original strand, 49422082 - 49422181
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||| |||||||| |||| ||||||  ||||||||||||||||||||||| || | ||     || ||| |||||||| ||||| |||||||||||    
T  49422082 ttgttgtttacacatttcataaggctgagtcacacaaataaaatacgtttttgccccttcgg-----aactgccgaggaattaaaaaaccggctgcagtt 49422176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 320
Target Start/End: Complemental strand, 958723 - 958617
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    |||||||||||||||||| ||||||| ||| || |||||||||||||||  |  | |  |||||| ||| || ||||||||||| ||| |||||||||||    
T  958723 tgttgacacattttataaggctgaggcacataagtaaaatacgtttttgtcctctcgacagttaactgc-gatgaattcaaaaaccggttgcagttaact 958625  T
Q  313 gctgagga 320  Q
    || |||||    
T  958624 gccgagga 958617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 4980051 - 4979940
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| | ||||| |||| | |||  ||||||||| |||| | || |||||| ||  || || |||||||| |||||||||||    
T  4980051 ttgttgttgacacattgcataaggttgaggcacacgagtaatttacgtttttcctccctcggcagttaactgtcgacgatttcaaaaaccggctgcagtt 4979952  T
Q  309 aactgctgagga 320  Q
    ||||||||||||    
T  4979951 aactgctgagga 4979940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 37865185 - 37865232
Alignment:
Q  287 aattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaa 334  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||||    
T  37865185 aatttaaaaatcggttgcagttaactgccgaggatcttctgctacaaa 37865232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 4786345 - 4786296
Alignment:
Q  306 gttaactgctgaggatcttctgctacaaatctggcaggagctctctcatc 355  Q
    ||||||||| || ||||||||||||||||||||| || ||||||||||||    
T  4786345 gttaactgccgatgatcttctgctacaaatctggtagaagctctctcatc 4786296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 34151615 - 34151664
Alignment:
Q  271 tagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  34151615 tagttaaatgccgagtaattcaaaaatcggctgcagttaactgccgagga 34151664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 24414839 - 24414883
Alignment:
Q  274 ttaattgctgaggaattcaaaaatcggctgcagttaactgctgag 318  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||    
T  24414839 ttaactgccgaggaattcaaaaatcggttgcagttaactgctgag 24414883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 44051226 - 44051123
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||||| |||| | |||  ||||||||||| |||| ||  ||||| ||| |||||| | | ||| |||||||||||    
T  44051226 ttgttgttgacacattgcataaggctgaggcacaccagtaatttacgtttttgccccatcggcggttaactgccgaggaaataagaaaccggctgcagtt 44051127  T
Q  309 aact 312  Q
    ||||    
T  44051126 aact 44051123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 44561464 - 44561361
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||  |||| | ||||||||| |||||| |  | ||| ||||| ||| ||| || | ||||| |||||||||||    
T  44561464 ttgttgttgacacatttcataaggctgagaaacacgagtaaaatacgattttgccctctcggttgttaactgccgagtaaataaaaaaccggctgcagtt 44561365  T
Q  309 aact 312  Q
    ||||    
T  44561364 aact 44561361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 18578619 - 18578693
Alignment:
Q  240 acacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    |||||| |||||||| |||||||  | |||| |||||| ||  |||||||||||||| |||||||||||| ||||    
T  18578619 acacaagtaaaatacatttttgcctccttggcagttaactgtcgaggaattcaaaaaacggctgcagttatctgc 18578693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 29700314 - 29700268
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctct 351  Q
    |||||| ||| || |||||||||||||||||||||||| ||||||||    
T  29700314 agttaattgccgatgatcttctgctacaaatctggcagaagctctct 29700268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 33383750 - 33383855
Alignment:
Q  215 ttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    ||||||||||| |||| | | ||| |||||| |||||||| |||||||    | ||||||||||||  ||||| || ||||| || ||||||||||||||    
T  33383750 ttgacacatttcataaggtttaggcacacaagtaaaatacatttttgccttctcggtagttaattgtcgaggattttaaaaaccgactgcagttaactgc 33383849  T
Q  315 tgagga 320  Q
     |||||    
T  33383850 cgagga 33383855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 9473732 - 9473692
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    |||||||||  |||||||||| |||||||||||||||||||    
T  9473732 agttaattgtcgaggaattcataaatcggctgcagttaact 9473692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 11287557 - 11287593
Alignment:
Q  326 tgctacaaatctggcaggagctctctcatccattatt 362  Q
    |||||||||| |||||| |||||||||||||||||||    
T  11287557 tgctacaaatgtggcagaagctctctcatccattatt 11287593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 17342144 - 17342184
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    |||||| ||| |||||||||| |||||||||||||||||||    
T  17342144 agttaactgccgaggaattcataaatcggctgcagttaact 17342184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 21018018 - 21017951
Alignment:
Q  303 gcagttaactgctgaggatcttct--gctacaaatctggcaggagct-ctctcatccattattcatct 367  Q
    |||||||||||| || ||||||||  |||||||||||||||| | || |||||||| |||||||||||    
T  21018018 gcagttaactgccgatgatcttctgagctacaaatctggcagaatctcctctcatctattattcatct 21017951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 24417494 - 24417446
Alignment:
Q  265 cattggtagttaattgctgaggaattcaaaaatcggctgcagttaactg 313  Q
    ||||||||||||| ||  ||| |||||||||| ||||||||||||||||    
T  24417494 cattggtagttaactgtcgagaaattcaaaaaccggctgcagttaactg 24417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 368
Target Start/End: Complemental strand, 19454459 - 19454300
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||| |||||  |||| | ||||  |||| | ||||||||| |||||| |  | || |||||| |||||||||||||||||||||| |||||||    
T  19454459 ttgttgttgatacattgcataaggttgagacacacgagtaaaatacgcttttgccctctcggcagttaactgctgaggaattcaaaaatcggttgcagtt 19454360  T
Q  309 aactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  19454359 aactgccgaggatcttctactacaaatctggcagaagctctctcatccattattcatctc 19454300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 29929365 - 29929476
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||| | ||||||||| | |  |||||| || ||||||||||||||| |||||||| ||    
T  29929365 ttgttgttgacacattttataaggctgaggcacacaagtaaaatatgattttgctccctcgacagttaactgttgaggaattcaaaaaccggctgcaatt 29929464  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  29929465 aactgccgagga 29929476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 29978519 - 29978630
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||| | ||||||||| | |  |||||| || ||||||||||||||| |||||||| ||    
T  29978519 ttgttgttgacacattttataaggctgaggcacacaagtaaaatatgattttgctccctcgacagttaactgttgaggaattcaaaaaccggctgcaatt 29978618  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  29978619 aactgccgagga 29978630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 30256137 - 30256026
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||| |   ||| || ||||||||||| ||| |||||||| ||||| |||||||||||    
T  30256137 ttgttgttgacacatttcataaagctgaggcacacaagtaaaatacataaatgcccccttggtagttaactgccgaggaattaaaaaaccggctgcagtt 30256038  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  30256037 aactgccgagga 30256026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 34694446 - 34694383
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34694446 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 34694383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 55207675 - 55207613
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55207675 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 55207613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 43571819 - 43571714
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| | | |||||||||| ||||||| |||||||| || | || |||||| ||||||||||||||||| ||||||||||||    
T  43571819 ttgttgttgacacattacataaggttcaggtacacaagtaaaatatgtttttgccccctcggcagttaactgctgaggaattcaaaagtcggctgcagtt 43571720  T
Q  309 aactgc 314  Q
    ||||||    
T  43571719 aactgc 43571714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 43568927 - 43568990
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||    
T  43568927 agttaactgctgaggatcttctgttacaaatctgacagaagctctctcatccattattcatctc 43568990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 51696586 - 51696523
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  51696586 agttaactgccgaggatcttctgctgcaaatctggcagaagctctctcatccattattcatctc 51696523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 41803059 - 41803121
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  41803059 agttaactgccgaggatcttttgctacaaatctggcagaagctctctcatccattattcatct 41803121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 51402410 - 51402348
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  51402410 agttaactgccgaggatcttctgctacaaatctgtcagaagctctctcatccattattcatct 51402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 313
Target Start/End: Complemental strand, 7247994 - 7247890
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||||| |||| ||||||||||| |||||| || | || |||||| ||| ||||||||||| || |||||||||||    
T  7247994 ttgttgttgacacattggataaggctgaggcacacgaataaaatacgcttttgccccctcggcagttaactgccgaggaattcaataaccggctgcagtt 7247895  T
Q  309 aactg 313  Q
    |||||    
T  7247894 aactg 7247890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 41579858 - 41579747
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||| ||  |||| ||||||| ||| || ||||||||| |||| | || | || |||||||||||||||||||||| || |||||||||||    
T  41579858 ttgttgttgacacgttgcataaggctgaggcacataagtaaaatacgatttttccccctcggcagttaattgctgaggaattcaataaccggctgcagtt 41579759  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  41579758 aactgccgagga 41579747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 43476253 - 43476316
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||    
T  43476253 agttaactgccgaggatcttttgctacaaatctgacagaagctctctcatccattattcatctc 43476316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 45101860 - 45101797
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  45101860 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatatattattcatctc 45101797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 55385198 - 55385261
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  55385198 agttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattaatctc 55385261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 45101982 - 45101872
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||| ||||||||| |||| | ||||| ||| || ||||||||||||||   || | || ||||||||| ||||||||||||||| |||||||||||    
T  45101982 ttgttgtcgacacatttcataaggttgaggcacataagtaaaatacgtttttatcccctcggcagttaattgttgaggaattcaaaaaccggctgcagtt 45101883  T
Q  309 aactgctgagg 319  Q
    |||||| ||||    
T  45101882 aactgccgagg 45101872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 7245155 - 7245216
Alignment:
Q  307 ttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  7245155 ttaactgccgagtatcttctgctacaaatctgacagaagctctctcatccattattcatctc 7245216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 41137780 - 41137829
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagctctctcatccattattcat 365  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41137780 gaggatcttctgctacaaatctggcagaagctctctcatccattattcat 41137829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 13896888 - 13896825
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| || ||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  13896888 agttaactgccgaagattttctactacaaatctggcagaagctctctcatccattattcatctc 13896825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 41577140 - 41577199
Alignment:
Q  309 aactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  41577140 aactgccgaggatcttctgctacaaatcttgcagaagctctctcatccattatccatctc 41577199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 52570578 - 52570515
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||| ||||||||||||||| | ||||||||| |||||||||||||    
T  52570578 agttaactgccgaggatcttctactacaaatctggcagaaactctctcattcattattcatctc 52570515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 24703427 - 24703374
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccat 358  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  24703427 agttaactgccgatgatcttctgctacaaatctggcagaagctctctcatccat 24703374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 2271325 - 2271261
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| | || ||||||||||| |||||||||    
T  2271325 agttaactgccgaggatcttctgctacaaatctggcagaatctcctctcatccataattcatctc 2271261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 34648218 - 34648151
Alignment:
Q  303 gcagttaactgctgaggatcttctgctacaaa--tctggcaggagctctctcatccattattcatctc 368  Q
    ||||| || ||||||||||||| |||||||||  |||||||| |||||||||||||||||||||||||    
T  34648218 gcagtaaattgctgaggatcttatgctacaaaattctggcagaagctctctcatccattattcatctc 34648151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 36134384 - 36134448
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| | || |||| ||||||||||||||||    
T  36134384 agttaactgccgaggatcttctgctacaaatctggcagaatctcctcttatccattattcatctc 36134448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 46344880 - 46344987
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    |||||||| |||  |||| | ||||| |||||| |||||||  ||||||| || | || |||||| ||  ||||||||||||||||||||||||||||||    
T  46344880 tgttgacaaattggataaggttgaggcacacaagtaaaatatttttttgccccctcggcagttaactgtcgaggaattcaaaaatcggctgcagttaact 46344979  T
Q  313 gctgagga 320  Q
    || |||||    
T  46344980 gccgagga 46344987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 49609444 - 49609507
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||| ||||||||||||||||||||  |||||||| || |||||||||||||    
T  49609444 agttaactgccgaggaacttctgctacaaatctggcataagctctcttattcattattcatctc 49609507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 4004813 - 4004751
Alignment:
Q  307 ttaactgctgaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatctc 368  Q
    |||||||| ||||||||||||||||||| ||||||| | || |||||||||||||||||||||    
T  4004813 ttaactgccgaggatcttctgctacaaacctggcagaatctcctctcatccattattcatctc 4004751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 49219792 - 49219740
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||||||||||| || ||| ||||||| |||||||||||||||||    
T  49219792 gaggatcttctgctacaaatttgacagaagctctcccatccattattcatctc 49219740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 28611234 - 28611123
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||| || |||||||| |||| ||||||  |||||| |||||||   |||||| || | || |||||| ||| ||| |||||||||| |||||||||||    
T  28611234 ttgttctttacacatttcataaggctgagacacacaagtaaaatataattttgccccctcggcagttaactgccgagaaattcaaaaaccggctgcagtt 28611135  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  28611134 aactgccgagga 28611123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 66841 - 66942
Alignment:
Q  210 tgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtta 309  Q
    |||||||||||||||| |||| ||||||  |||| | ||||||||| |||||| || | || |||||| ||| |||| |||| |||| ||||||||||||    
T  66841 tgttgttgacacatttgataaggctgagacacacgagtaaaatacgcttttgccccctcggcagttaactgccgaggtattc-aaaaccggctgcagtta 66939  T
Q  310 act 312  Q
    |||    
T  66940 act 66942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 2426559 - 2426608
Alignment:
Q  319 gatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||| |||| |||||| ||||||||||| |||||||||||||    
T  2426559 gatcttctgctataaatttggcagaagctctctcattcattattcatctc 2426608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 2745308 - 2745235
Alignment:
Q  240 acacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactg 313  Q
    |||| ||||||||||| |||| | || | ||||||||| ||||||||||||  ||| |||||||||||||||||    
T  2745308 acaccaataaaatacgattttaccccctcggtagttaactgctgaggaatttgaaattcggctgcagttaactg 2745235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 41577014 - 41577067
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgc 262  Q
    ||||||||||||||||| |||| ||||||  | |||||||||||||||||||||    
T  41577014 ttgttgttgacacatttcataaggctgagaaatacaaataaaatacgtttttgc 41577067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 50216944 - 50216883
Alignment:
Q  253 acgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    |||||||||| ||||||| |||||| ||| |||||||| ||||  |||||||||||||||||    
T  50216944 acgtttttgccccattggcagttaactgccgaggaattaaaaatccggctgcagttaactgc 50216883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 314
Target Start/End: Complemental strand, 55207793 - 55207692
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||| |||  ||||||  |||| | ||||||||  |||||| |||| || |||||| ||| || ||||||||||| ||| |||||||||||    
T  55207793 tgttgacacatttcatatggctgagaaacacgagtaaaatactcttttgccccatcggcagttaactgccgaagaattcaaaaaccggttgcagttaact 55207694  T
Q  313 gc 314  Q
    ||    
T  55207693 gc 55207692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 321
Target Start/End: Original strand, 11380380 - 11380492
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||||||||  | | ||||||  |||| | |||||||||||||||| || | || |||||| ||| |||||||| ||||   || |||||||    
T  11380380 ttgttgttgacacatttggttaggctgagaaacacgagtaaaatacgtttttgccccttcggcagttaactgccgaggaattaaaaatatggttgcagtt 11380479  T
Q  309 aactgctgaggat 321  Q
    |||||| ||||||    
T  11380480 aactgccgaggat 11380492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 29918475 - 29918364
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||| |||| |||| ||||||| ||| || ||||||||| |||||  || | || | |||| ||| ||  ||||| |||| |||||||||||    
T  29918475 ttgttgttgacatatttcataaggctgaggcacataagtaaaatacgattttggcccctcggcaattaactgccgaataattcgaaaaccggctgcagtt 29918376  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  29918375 aactgccgagga 29918364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 29967628 - 29967517
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||| |||| |||| ||||||| ||| || ||||||||| |||||  || | || | |||| ||| ||  ||||| |||| |||||||||||    
T  29967628 ttgttgttgacatatttcataaggctgaggcacataagtaaaatacgattttggcccctcggcaattaactgccgaataattcgaaaaccggctgcagtt 29967529  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  29967528 aactgccgagga 29967517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 52570699 - 52570597
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||| |||||||||||  |||| ||||||| |||| | |||||||||||||| | || | || |||||| ||| || ||||||||||| || ||||||||    
T  52570699 ttgtcgttgacacattgcataaggctgaggcacacgattaaaatacgttttttc-ccctcggcagttaactgccgaagaattcaaaaaccgactgcagtt 52570601  T
Q  309 aact 312  Q
    ||||    
T  52570600 aact 52570597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 43568865 - 43568942
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgagga 287  Q
    |||||||||||||||||||||| ||||||  |||| | ||||||||| |||||| || |  |||||||| |||||||||    
T  43568865 ttgttgttgacacattttataaggctgagaaacacgagtaaaatacgcttttgc-ccttgagtagttaactgctgagga 43568942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 46402410 - 46402483
Alignment:
Q  298 cggctgcagttaactgctgaggatcttctg--ctac-aaatctggcaggagct-ctctcatccattattcatct 367  Q
    ||||||||||||||||| ||||||||||||  |||| ||||||||||| | || ||||||||||||||| ||||    
T  46402410 cggctgcagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattgatct 46402483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 41802975 - 41803048
Alignment:
Q  247 taaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||||||||| |  | || |||||| ||| || ||||| ||||| ||||||||||||||||| |||||    
T  41802975 taaaatacgtttttgcccactcggcagttaactgccgaagaatttaaaaaccggctgcagttaactgccgagga 41803048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 42804398 - 42804499
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||| |||| ||||||| |||||| ||||||||  ||| || || | | ||||||| ||| |||||||| |||||   | |||||||||||    
T  42804398 tgttgacacatttcataaggctgaggcacacaagtaaaatacactttagccccctcgatagttaactgccgaggaattaaaaaactagttgcagttaact 42804497  T
Q  313 gc 314  Q
    ||    
T  42804498 gc 42804499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 42807734 - 42807681
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgc 262  Q
    |||||||| |||||||| |||| ||||| | ||||||||||||||| |||||||    
T  42807734 ttgttgttaacacatttcataaggctgatgcacacaaataaaatacatttttgc 42807681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 55267380 - 55267481
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||| ||  |||| ||||||  |||| | |||  ||||||||||| || | |  |||||| ||| || |||||||||||||||||||||||    
T  55267380 ttgttgttgacacgttgcataaggctgagacacacgagtaatttacgtttttgccccctcgacagttaactgccgaagaattcaaaaatcggctgcagtt 55267479  T
Q  309 aa 310  Q
    ||    
T  55267480 aa 55267481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 20366189 - 20366237
Alignment:
Q  267 ttggtagttaattgctgaggaattcaaaaatcggctgcagttaactgct 315  Q
    |||| |||||| ||| |||||||||||||| | ||||||||||||||||    
T  20366189 ttggcagttaactgccgaggaattcaaaaaccagctgcagttaactgct 20366237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 50604491 - 50604451
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||||||| || |||||| |||||||||||||    
T  50604491 agttaattgctgaggaagtccaaaatcagctgcagttaact 50604451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 51402528 - 51402428
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||| |||  ||||||  |||| | ||||||||||||||||| | |  | |||||||||| ||  |||||||||||||  || ||||||||    
T  51402528 tgttgacacatttcatatggctgagaaacacgagtaaaatacgtttttgcttcctcagcagttaattgcagaataattcaaaaatcgattgtagttaact 51402429  T
Q  313 g 313  Q
    |    
T  51402428 g 51402428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 272 - 368
Target Start/End: Complemental strand, 21188471 - 21188375
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21188471 agttaactgccgaggaattcaaaaaccggctgcagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 21188375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 30355251 - 30355189
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30355251 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 30355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 34139879 - 34139995
Alignment:
Q  252 tacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctct 351  Q
    ||||||||||| || | |||| |||| ||| || |||||  |||  ||||||||||||||||| ||||||||||  ||||||||||||||| ||||||||    
T  34139879 tacgtttttgccccttcggtaattaactgccgaagaattagaaatccggctgcagttaactgccgaggatcttcctctacaaatctggcagaagctctct 34139978  T
Q  352 catccattattcatctc 368  Q
     ||||||||||||||||    
T  34139979 tatccattattcatctc 34139995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 30355373 - 30355262
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||   |||||  |||| | ||||||||| |||||| || | || ||||||||||||| |||||||||||||||||||||||    
T  30355373 ttgttgttgacacatttcatatgactgagaaacacgagtaaaatacgcttttgccccctcggcagttaattgctgaagaattcaaaaatcggctgcagtt 30355274  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  30355273 aactgccgagga 30355262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 9494940 - 9494829
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||| || | ||| || | || |||||| ||| |||||||| ||||| |||||||||||    
T  9494940 ttgttgttgacacatttcataaggctgaggcacacaagtaaaataggtatatgccccctcggcagttaactgccgaggaattaaaaaaccggctgcagtt 9494841  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  9494840 aactgccgagga 9494829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 36392064 - 36392175
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||| ||| |||||| |||||||||||||||| || | |  |||||| || ||||||||||||||||||| ||| |||    
T  36392064 ttgttgttgacacattacataaggcttaggcacacaagtaaaatacgtttttgccccctcgacagttaactgttgaggaattcaaaaatcggttgcggtt 36392163  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  36392164 aactgccgagga 36392175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 41047838 - 41047901
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  41047838 agttaactgccgaggatcttctgctacaaatctggaggaagctctctcatccattattcatctc 41047901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 46863356 - 46863293
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| || |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  46863356 agttaactgccgaagatcttctgctacaaatctggcagaagctctttcatccattattcatctc 46863293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 28980184 - 28980123
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatc 366  Q
    |||||||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  28980184 agttaactgccgaggattttctgctacaaatctgacagaagctctctcatccattattcatc 28980123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 46863478 - 46863373
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||| ||||  |||| ||||||  |||||| |||||||||||||||| |||| || |||||| ||| ||| |||| ||||| |||||||||||    
T  46863478 ttgttgttgacgcattgcataaggctgagacacacaagtaaaatacgtttttgccccatcggcagttaactgccgagaaattgaaaaaccggctgcagtt 46863379  T
Q  309 aactgc 314  Q
    ||||||    
T  46863378 aactgc 46863373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 28115544 - 28115481
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||| ||||| ||||||||||||||||| |||  |||||||||||||||||||||||||    
T  28115544 agttaactgttgagggtcttctgctacaaatctagcataagctctctcatccattattcatctc 28115481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 36394950 - 36394887
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  36394950 agttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccgttattaatctc 36394887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 48314613 - 48314715
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| | |||||||||||| |||||||| ||||||| || | || |||||| ||| ||||||||||| || |||||||||||    
T  48314613 ttgttgttgacacattgcataaggttgaggtacacaagtaaaatacatttttgc-ccctcggcagttaactgccgaggaattcaataaccggctgcagtt 48314711  T
Q  309 aact 312  Q
    ||||    
T  48314712 aact 48314715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 10705187 - 10705292
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||| |||||| |||| |||| ||| ||| |||||| |||||||| ||||| | || |||| |||||| ||| ||| |||| |||||||||||||||||    
T  10705187 ttgttattgacatatttcataaggctaaggcacacaagtaaaatacatttttccccccttggcagttaactgccgagaaattaaaaaatcggctgcagtt 10705286  T
Q  309 aactgc 314  Q
    ||||||    
T  10705287 aactgc 10705292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 42682057 - 42682118
Alignment:
Q  307 ttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||| |||||||||||||||||||||| |||  || ||||||||||||||||||||||    
T  42682057 ttaactgccgaggatcttctgctacaaatctagcataagttctctcatccattattcatctc 42682118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 17838711 - 17838775
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatctc 368  Q
    |||||||||| || |||||||||||||||||||||||| | || |||||||||||||||||||||    
T  17838711 agttaactgccgacgatcttctgctacaaatctggcagaatctcctctcatccattattcatctc 17838775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 47060869 - 47060976
Alignment:
Q  212 ttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaac 311  Q
    ||||||||| |||| |||| ||||||| | |||| |||||||||||||||| || | || |||||| ||  ||||||||| ||||||||||| |||||||    
T  47060869 ttgttgacatatttcataaggctgaggcatacaagtaaaatacgtttttgccccctcggcagttaactgtcgaggaattc-aaaatcggctgtagttaac 47060967  T
Q  312 tgctgagga 320  Q
    ||| |||||    
T  47060968 tgccgagga 47060976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 40587722 - 40587785
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||| ||||| |||||||  || |||||||||||||||||||||||||    
T  40587722 agttaactgccgaggatcttatgctataaatctgaaagaagctctctcatccattattcatctc 40587785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 313
Target Start/End: Original strand, 34622438 - 34622542
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||||| |||||| |||  ||||||||||| || |||  |||||| ||| |||||||| | ||| || ||||||||    
T  34622438 ttgttgttgacacattgcataaggctgaggcacacaagtaatttacgtttttgcccccttgacagttaactgcagaggaattaagaaaccgactgcagtt 34622537  T
Q  309 aactg 313  Q
    |||||    
T  34622538 aactg 34622542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 43686919 - 43686859
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcat 365  Q
    |||||||||| ||| || |||||||||||||||| ||  ||||||||||||||||||||||    
T  43686919 agttaactgccgagaattttctgctacaaatctgacataagctctctcatccattattcat 43686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 48269713 - 48269765
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||||||||||| ||  || ||||||||||||||||||||||    
T  48269713 gaggatcttctgctacaaatctgacaaaagttctctcatccattattcatctc 48269765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 41049322 - 41049212
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||| | ||| || ||||||||| ||||| ||  | ||||||||| ||  || |||||||| ||||||||||||||    
T  41049322 ttgttgttgacacattgcataaggctgatgcacataagtaaaatacgcttttgttct-tcggtagttaactgtcgaagaattcaataatcggctgcagtt 41049224  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  41049223 aactgccgagga 41049212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 48269620 - 48269671
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgttttt 260  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||| ||||||    
T  48269620 ttgttgttgacacattttataaggctgaggcacacaagtaaaatatgttttt 48269671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 45364227 - 45364169
Alignment:
Q  310 actgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||| |||||||||| ||||||||||||| || |||||||| ||| ||||||||||||    
T  45364227 actgccgaggatcttcggctacaaatctggtagaagctctcttatctattattcatctc 45364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 48316398 - 48316296
Alignment:
Q  205 agatttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgc 304  Q
    ||||||||||||| ||||||| |||| ||||||  |||||| ||||||| |||||||| || |||  |||||| ||| || || ||||| || |||||||    
T  48316398 agatttgttgttggcacatttcataaggctgagacacacaagtaaaataagtttttgcccccttgacagttaactgccgaagacttcaataaccggctgc 48316299  T
Q  305 agt 307  Q
    |||    
T  48316298 agt 48316296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 42681933 - 42682044
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttg-ctccattggtagttaattgctgaggaattcaaaaatcggctgcagt 307  Q
    ||||| |||||| ||||||||| ||||||| ||| || |||||| | |||||| |||| | |||||||||  | |||| |||||||||| | ||||||||    
T  42681933 ttgttcttgacatattttataaggctgaggcacataagtaaaatgcatttttgtctcc-tcggtagttaacggttgagaaattcaaaaaccagctgcagt 42682031  T
Q  308 taactgctgagga 320  Q
    ||||||| |||||    
T  42682032 taactgccgagga 42682044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 46860457 - 46860553
Alignment:
Q  216 tgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    |||||||||  |||| ||||||| |||||| ||||||||| |||||| || | || |||||| ||  |||||||| ||||| || ||||||||||||    
T  46860457 tgacacattacataaggctgaggcacacaagtaaaatacgcttttgccccctcggcagttaactgtcgaggaattgaaaaaccgactgcagttaact 46860553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 27453728 - 27453617
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||| |||||||| |||| ||| ||  ||| || |||||||||  ||||| || | || |||||| ||| |||||||| ||||  |||||||||||    
T  27453728 ttgttgttcacacatttgataaggcttagaaacataagtaaaatacgactttgccccctcggcagttaactgccgaggaattaaaaatccggctgcagtt 27453629  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  27453628 aactgccgagga 27453617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 41047717 - 41047827
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  ||||  ||| || ||| ||||||||||| |||||||| | | ||||||||| ||| || ||||| || |||||| || ||||    
T  41047717 ttgttgttgacacattgcataagactgcggcacataaataaaatacatttttgcttc-tcggtagttaactgcagaagaatttaataatcgggtgtagtt 41047815  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  41047816 aactgccgagga 41047827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 41623945 - 41623884
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagt 274  Q
    ||||||||||||  |||| | ||||| |||||| |||||||||||||||| || ||||||||    
T  41623945 tgttgacacattacataaggttgaggcacacaagtaaaatacgtttttgcccccttggtagt 41623884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 34623471 - 34623403
Alignment:
Q  252 tacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||||  ||| || |||||| ||| |||||||| | | ||||||||||||||||||| |||||    
T  34623471 tacgtttttgcctcatcggcagttaactgccgaggaattaagagatcggctgcagttaactgccgagga 34623403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 39460555 - 39460603
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||| ||||| |||||||| ||||  |||||||||||||||||||||||    
T  39460555 agttgattgccgaggaattaaaaatccggctgcagttaactgctgagga 39460603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 48316295 - 48316259
Alignment:
Q  331 caaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  48316295 caaatctggcagaagctctctcatccattattaatct 48316259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 14174945 - 14174860
Alignment:
Q  283 gaggaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  14174945 gaggaattcaaaaatcggctgcagttaactgccgaggatcttctgctaaaaatctggcagaagctctctcatccattattcatctc 14174860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 279 - 368
Target Start/End: Complemental strand, 27487704 - 27487615
Alignment:
Q  279 tgctgaggaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||| |||   ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27487704 tgctgaggaattaaaattccggctgcagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 27487615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 368
Target Start/End: Complemental strand, 35527141 - 35526984
Alignment:
Q  215 ttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    ||||||||||| |||| ||||||| |||||| ||||||||||||||||    |||| |||||||||| || ||| |||||||  |||||||||||||||     
T  35527141 ttgacacatttcataaggctgaggcacacaagtaaaatacgtttttgccttcttggcagttaattgccgaagaaatcaaaaacaggctgcagttaactgt 35527042  T
Q  315 tgaggatcttctgctac--aaatctggcaggagctc--tctcatccattattcatctc 368  Q
     ||||||||||||||||  |||| |||||| | |||  ||||||||||||||||||||    
T  35527041 agaggatcttctgctacaaaaatatggcagaacctctatctcatccattattcatctc 35526984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 41804167 - 41804056
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||| |||||| || | || |||||| ||| |||||||||||||| || ||||||||    
T  41804167 ttgttgttgacacattttataaggctgaggcacacaagtaaaatacgcttttgccccttcggcagttaactgccgaggaattcaaaaaccgactgcagtt 41804068  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  41804067 aactgccgagga 41804056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 29763231 - 29763168
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29763231 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 29763168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 42572769 - 42572706
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42572769 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 42572706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 46973143 - 46973254
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| || | ||||||  |||||| ||||||||| |||||| || |||| |||||| ||| |||||||||||||| |||||||||||    
T  46973143 ttgttgttgacacatttcattaggctgagacacacaagtaaaatacgattttgcccccttggcagttaactgccgaggaattcaaaaaccggctgcagtt 46973242  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  46973243 aactgccgagga 46973254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 11183125 - 11183236
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||  | || | ||||||||||||||||||| |||  |||||| |||||||||||| ||||  |||||||||||    
T  11183125 ttgttgttgacacatttgataaggctgagaaatacgagtaaaatacgtttttgctcccttgacagttaactgctgaggaattaaaaatccggctgcagtt 11183224  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  11183225 aactgccgagga 11183236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 44596893 - 44596959
Alignment:
Q  302 tgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||||||    
T  44596893 tgcagttaactgctgagtatcttctgctacaaatttggcagaaactctctcatccattattcatctc 44596959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 49927513 - 49927451
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49927513 agttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 49927451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 26637257 - 26637205
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26637257 gaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 26637205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 13173775 - 13173885
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||||  |||||| || | || |||||| ||||| |||||||||||| |||||||||||    
T  13173775 ttgttgttgacacatttcataaggctgaggcacacaagtaaaatactattttgccccctcggcagttaactgctg-ggaattcaaaaaccggctgcagtt 13173873  T
Q  309 aactgctgagga 320  Q
    ||| || |||||    
T  13173874 aacagccgagga 13173885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 18975254 - 18975143
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||| || | ||  ||||| ||  |||||||| || ||  || |||||||    
T  18975254 ttgttgttgacacattgtataaagctgaggtacacaagtaaaatacgtttttgccccctcggcggttaactgtcgaggaatttaataactggttgcagtt 18975155  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  18975154 aactgcagagga 18975143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 19053998 - 19054101
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||  |||| | |||||||||||||||| || | |  |||||| ||| |||||||||||||| |||||||||||    
T  19053998 ttgttgttgacacatttcataaggctgagaaacacgagtaaaatacgtttttgccccctcgacagttaactgccgaggaattcaaaaaccggctgcagtt 19054097  T
Q  309 aact 312  Q
    ||||    
T  19054098 aact 19054101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 46141721 - 46141832
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||| |||  |||| |||||||||||||| ||||||||| |||||| |  | || |||||| ||| ||||||||||| || |||||||||||    
T  46141721 ttgttgttgacatattgcataaggctgaggtacacaagtaaaatacgattttgccctctcggcagttaactgccgaggaattcaataaccggctgcagtt 46141820  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  46141821 aactgccgagga 46141832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 49426741 - 49426812
Alignment:
Q  298 cggctgcagttaactgctgaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatctc 368  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  49426741 cggctgcaattaactgccgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctc 49426812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 35521553 - 35521654
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||| |||||| |  | || |||||| ||| |||||| | ||||| |||||||||||    
T  35521553 ttgttgttgacacattttataaggctgaggcacacaagtaaaatacgattttgccctctcggcagttaactgccgaggaaataaaaaaccggctgcagtt 35521652  T
Q  309 aa 310  Q
    ||    
T  35521653 aa 35521654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 13972134 - 13972186
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  13972134 gaggatcttctgctacaaatctggcagaagctctctcatctattattcatctc 13972186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 6434809 - 6434872
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||  ||||||||||||||||||||||| || ||| |||||||||||||||||||||    
T  6434809 agttaactgccaaggatcttctgctacaaatctggtagaagcactctcatccattattcatctc 6434872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 6437673 - 6437570
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||||||||||| |||||| ||||||||| |||||| |  | || |||||| ||| |||||| |||| ||||| ||||||||    
T  6437673 ttgttgttgacacattgcataaagctgaggcacacaagtaaaatacgcttttgccctctcggcagttaactgccgaggaagtcaataatcgactgcagtt 6437574  T
Q  309 aact 312  Q
    ||||    
T  6437573 aact 6437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 36908521 - 36908627
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    |||||||||||||||||| | ||||| |||||| |||||||| |||||||  | | || |||||| ||  || ||||||||||| |||||||||||||||    
T  36908521 tgttgacacattttataaggatgaggcacacaagtaaaatacatttttgcctcctcggcagttaactgtcgaagaattcaaaaaccggctgcagttaact 36908620  T
Q  313 gctgagg 319  Q
    || ||||    
T  36908621 gccgagg 36908627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 49395664 - 49395714
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatc 355  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  49395664 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatc 49395714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 13178228 - 13178155
Alignment:
Q  247 taaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    ||||||||||||||||||| | || |||||| ||||||| |||| ||||| | |||||||||||||||||||||    
T  13178228 taaaatacgtttttgctccctcggcagttaactgctgagaaatttaaaaaccagctgcagttaactgctgagga 13178155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 23276242 - 23276131
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||| || ||||| |||| ||||||  |||| | |||||||||||||||| || | || |||||| |||||||||||| ||||  ||||| |||||    
T  23276242 ttgttgttcacgcatttgataaggctgagaaacacgagtaaaatacgtttttgccccctcggcagttaactgctgaggaattaaaaatccggctacagtt 23276143  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  23276142 aactgccgagga 23276131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 320
Target Start/End: Complemental strand, 36076687 - 36076581
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||| |||| ||||||  |||||| |||||||||||||  | || | |||||||||   | |||||||||||||| |||||||||||||||    
T  36076687 tgttgacacatttcataaggctgagaaacacaagtaaaatacgttttacc-ccttcggtagttaaccaccgaggaattcaaaaaccggctgcagttaact 36076589  T
Q  313 gctgagga 320  Q
    || |||||    
T  36076588 gccgagga 36076581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 4208454 - 4208502
Alignment:
Q  317 aggatcttctgctacaaatctggcaggagctctctcatccattattcat 365  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  4208454 aggatcttctgctacaaatctaccagaagctctctcatccattattcat 4208502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 13147556 - 13147620
Alignment:
Q  304 cagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||  || ||||||||||||||||||||| |  | |||||||||||||||||||||||    
T  13147556 cagttaactgtcgatgatcttctgctacaaatctggtaaaaactctctcatccattattcatctc 13147620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 36072309 - 36072419
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttg--ctccattggtagttaattgctgaggaattcaaaaatcggctgcag 306  Q
    ||||||||||||||||| |||| | | ||| |||||||||||||||| |||||  ||||   |||| |||  ||| ||| |||| |||||||||||||||    
T  36072309 ttgttgttgacacatttcataaggttaaggcacacaaataaaatacgattttgttctcc---ggtaattagctgccgagaaattgaaaaatcggctgcag 36072405  T
Q  307 ttaactgctgagga 320  Q
    |||||||| |||||    
T  36072406 ttaactgccgagga 36072419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 51269010 - 51269062
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||||||||||| | |||| ||||||||||| |||||||||||||    
T  51269010 gaggatcttctgctacaaatttagcagaagctctctcattcattattcatctc 51269062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 13972003 - 13972112
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||  |||||| |||||||||||||||| || | || |||| | ||| |||||||| |||||  ||||||||||    
T  13972003 ttgttgttgacacatttcataaggctgagaaacacaagtaaaatacgtttttgccccttcggcagtt-actgccgaggaatt-aaaaactggctgcagtt 13972100  T
Q  309 aactgctgagga 320  Q
    ||| || |||||    
T  13972101 aacagccgagga 13972112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 29435034 - 29435096
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| |||||| || |||||||||| |||||| || ||||||||||||||||||||||    
T  29435034 agttaactgcagaggatttt-tgctacaaatttggcagaagttctctcatccattattcatctc 29435096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 49857981 - 49857873
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||||||||||||| | ||||  |||||| ||||||||||   ||| || | || |||||| ||| || ||||| ||||||| |||||||||    
T  49857981 ttgttgttgacacattttataaggttgag--acacaagtaaaatacgtaaatgccccctcggcagttaactgccgatgaatttaaaaatcagctgcagtt 49857884  T
Q  309 aactgctgagg 319  Q
    |||||| ||||    
T  49857883 aactgccgagg 49857873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 320
Target Start/End: Complemental strand, 51666768 - 51666662
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||  ||||||||| |  |||| | ||||||||| |||||| || | || |||||| ||| ||| ||||| ||| ||||||||||||||||    
T  51666768 tgttgacacattgcataaagctgtgtcacacgagtaaaatacgcttttgccccctcggcagttaaatgccgagtaattcgaaa-tcggctgcagttaact 51666670  T
Q  313 gctgagga 320  Q
    ||||||||    
T  51666669 gctgagga 51666662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 26633469 - 26633577
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| | ||||| |||||| ||||||||| |||||| || | |   ||||| | | || ||||||||||| ||| |||||||    
T  26633469 ttgttgttgacacatttcataaggttgaggcacacaagtaaaatacgcttttgccccctcg---gttaactaccgaagaattcaaaaaccggttgcagtt 26633565  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  26633566 aactgccgagga 26633577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 314
Target Start/End: Original strand, 27485008 - 27485103
Alignment:
Q  219 cacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    ||||||| |||| ||||||  |||| | |||||||||||||||| || | || |||||| |||  ||||||| ||||  |||||||||||||||||    
T  27485008 cacatttgataaggctgagaaacacgagtaaaatacgtttttgccccctcggcagttaactgcctaggaattaaaaatccggctgcagttaactgc 27485103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 36908642 - 36908698
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagctctc----tcatccattattcatctc 368  Q
    ||||| ||||||||||||||||||||| |||||||    ||||||||||||||||||    
T  36908642 gaggagcttctgctacaaatctggcagaagctctctcattcatccattattcatctc 36908698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 49924795 - 49924906
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||||| |||| | |||  ||||||||||| || | || | |||| ||| ||  |||||||||| ||||| |||||    
T  49924795 ttgttgttgacacattgcataaggctgaggcacacgagtaatttacgtttttgccccttcggcaattaactgccgaaaaattcaaaaaccggctacagtt 49924894  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  49924895 aactgccgagga 49924906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 4516033 - 4516075
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    |||||| ||| |||||||||||||| |||||||||||||||||    
T  4516033 agttaactgccgaggaattcaaaaaccggctgcagttaactgc 4516075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 27115894 - 27115852
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    |||||||||| |||||||| ||||| |||||||||||||||||    
T  27115894 agttaattgccgaggaatttaaaaaccggctgcagttaactgc 27115852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 19499213 - 19499135
Alignment:
Q  240 acacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||| |||||||||||||||| |  | |  |||||| ||||||| |||| |||| |||||||||||||||||| |||||    
T  19499213 acacaagtaaaatacgtttttgccc--tcgacagttaactgctgagaaatttaaaattcggctgcagttaactgccgagga 19499135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 29709309 - 29709260
Alignment:
Q  319 gatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||| ||||| |||||| |||| |||||| ||||||||||||||||||    
T  29709309 gatcttttgctataaatctagcagaagctctttcatccattattcatctc 29709260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 41779766 - 41779803
Alignment:
Q  331 caaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  41779766 caaatctagcagaagctctctcatccattattcatctc 41779803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 24364716 - 24364680
Alignment:
Q  326 tgctacaaatctggcaggagctctctcatccattatt 362  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  24364716 tgctacaaatctggcagaagctctcacatccattatt 24364680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 42865835 - 42865754
Alignment:
Q  286 gaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    ||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42865835 gaattcaaaaaccggttgcagttaattgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 42865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 34682196 - 34682307
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||||| |||  |||||| ||  |||||||||||||| |||||||||||    
T  34682196 ttgttgttgacacatttcataaggctgaggttcacaagtaaaatacgcttttgctcccttgacagttaactgtcgaggaattcaaaaaccggctgcagtt 34682295  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  34682296 aactgccgagga 34682307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 18538469 - 18538358
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| || | ||||||| |||||| ||||||||| |||||| || | || |||||||||  |||||||||||||| |||||||||||    
T  18538469 ttgttgttgacacatttcattaggctgaggcacacaagtaaaatacgattttgccccctcggcagttaattgtcgaggaattcaaaaaccggctgcagtt 18538370  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  18538369 aactgccgagga 18538358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 20192292 - 20192403
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||||| |||||| || | |  |||||| |||||| |||||||| ||||||||||||||    
T  20192292 ttgttgttgacacatttcataaggctgaggcacacaagtaaaatacgattttgccccttcgtcagttaactgctgaagaattcaataatcggctgcagtt 20192391  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  20192392 aactgccgagga 20192403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 542802 - 542739
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  542802 agttaactgccgaggatcttctgctacaaatctggcagaagttctctcatccattattcatctc 542739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 18307315 - 18307378
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  18307315 agttaactgccgaggatcttctgctacaaatctggcagaagccctctcatccattattcatctc 18307378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 35564322 - 35564381
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattca 364  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  35564322 agttaactgctgaggatcttctgctacaaatctggcataagctctctcatccattattca 35564381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 25497572 - 25497635
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  25497572 agttaactgccgagaatcttctgctacaaatcaggcagaagctctctcatccattattcatctc 25497635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 20200282 - 20200171
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||||| ||||||||||||||||||||||| |||| || |||||| ||   || ||||||| || |  ||||||||    
T  20200282 ttgttgttgacacattgcataaggctgaggcacacaaataaaatacgtttttgccccatcggcagttaactgtcaagaaattcaataaccaactgcagtt 20200183  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  20200182 aactgccgagga 20200171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 11346068 - 11346132
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatctc 368  Q
    |||||||||  ||||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  11346068 agttaactgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctc 11346132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 3603282 - 3603179
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||||| ||| || ||||||||||||||||||| | |  |||||| ||| || |||||||| ||  ||||||||||    
T  3603282 ttgttgttgacacattgcataaggctgaggcacataagtaaaatacgtttttgctccctcgacagttaactgccgaagaattcaataactggctgcagtt 3603183  T
Q  309 aact 312  Q
    ||||    
T  3603182 aact 3603179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 20192414 - 20192464
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatc 355  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  20192414 agttaaatgccgaggatcttctgctacaaatctggcagaagctctctcatc 20192464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 18307231 - 18307304
Alignment:
Q  247 taaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    ||||||||||||||||||| | || |||||| ||  |||||||| |||||||||||| |||||||||| |||||    
T  18307231 taaaatacgtttttgctccttcggcagttaactgtcgaggaattaaaaaatcggctgtagttaactgccgagga 18307304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 18310155 - 18310050
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| ||||||| |||||| ||||||||||||||||  | |  | |||||| ||  ||||||||||| || || ||||||||    
T  18310155 ttgttgttgacacattgcataaggctgaggcacacaagtaaaatacgtttttgcctcctcagcagttaactgtcgaggaattcaataaccgactgcagtt 18310056  T
Q  309 aactgc 314  Q
    ||||||    
T  18310055 aactgc 18310050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 8537226 - 8537290
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatctc 368  Q
    |||||||||| |||||| |||||||||||||||| ||| | || |||||||||||||||||||||    
T  8537226 agttaactgccgaggatgttctgctacaaatctgccagaatctcctctcatccattattcatctc 8537290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 3600398 - 3600461
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||| || ||||||||||||||||||||||| ||| || ||| |||| |||||||||||||    
T  3600398 agttaacagccgaggatcttctgctacaaatctgacagaagttctttcatgcattattcatctc 3600461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 8702307 - 8702221
Alignment:
Q  234 tgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcgg-ctgcagttaactgctgagga 320  Q
    |||||||||||| ||||||||| ||||||||| | |  |||||| ||| |||||||| ||||||| | ||||||||||||||||||||    
T  8702307 tgaggtacacaagtaaaatacgattttgctccctcgacagttaactgccgaggaatt-aaaaatctgactgcagttaactgctgagga 8702221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 19228780 - 19228675
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||  |||||| ||||||||||   ||| || | || |||||| ||| || ||||| ||||| ||| |||||||    
T  19228780 ttgttgttgacacatttgataaggctgagacacacaagtaaaatacgtaaatgccccctcggcagttaactgccgatgaattaaaaaaccggatgcagtt 19228681  T
Q  309 aactgc 314  Q
    ||||||    
T  19228680 aactgc 19228675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 24053119 - 24053224
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||| | |||| |  |||  ||| |||||||||||||||||| ||  | || |||||| ||| ||| |||||||||| || ||||||||    
T  24053119 ttgttgttgacacatatgataaggtcgagacacataaataaaatacgtttttgttctctcggcagttaaatgccgagtaattcaaaaaccgtctgcagtt 24053218  T
Q  309 aactgc 314  Q
    ||||||    
T  24053219 aactgc 24053224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 1401428 - 1401389
Alignment:
Q  329 tacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  1401428 tacaaatctagcagaagctctctcatccattattcatctc 1401389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 38968039 - 38968145
Alignment:
Q  214 gttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactg 313  Q
    ||||| |||||| |||| |||||   ||| || ||||||||||||||| ||| | ||||||||| | | |||||||  ||||  ||||||||||||||||    
T  38968039 gttgatacatttcataaggctgaaaaacataagtaaaatacgtttttgatccttcggtagttaactaccgaggaataaaaaatccggctgcagttaactg 38968138  T
Q  314 ctgagga 320  Q
    | |||||    
T  38968139 ccgagga 38968145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 3600275 - 3600328
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgc 262  Q
    ||||||||||||||||| |||||| ||||  |||||| ||||||| ||||||||    
T  3600275 ttgttgttgacacatttcataaagttgagccacacaagtaaaatatgtttttgc 3600328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 6267997 - 6268038
Alignment:
Q  274 ttaattgctgaggaattcaaaa-atcggctgcagttaactgc 314  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  6267997 ttaattgccgaggaattcaaaaaatcggctgcagttaactgc 6268038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 24050040 - 24050077
Alignment:
Q  283 gaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  24050040 gaggaattcaaaaaccggctgcacttaactgctgagga 24050077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 25497524 - 25497561
Alignment:
Q  283 gaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  25497524 gaggaattcaaaaattggctgcagttaactgccgagga 25497561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 42539469 - 42539396
Alignment:
Q  247 taaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||||||||| || | ||||| ||| ||  ||| |||| |||| |||||||||||||||||| |||||    
T  42539469 taaaatacgtttttgccccttaggtagctaactgtcgagaaattaaaaattcggctgcagttaactgccgagga 42539396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 272 - 368
Target Start/End: Original strand, 29061298 - 29061394
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||| ||| ||||||||  ||| |||||||||||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  29061298 agttaactgccgaggaattagaaattcggctgcagttaacttccgaggatcttctgctacaaatctggtagaagctctctcatccattattcatctc 29061394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 13479665 - 13479774
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||||| |||||| || | ||||||||| ||  | |||||||||||| | |||||||||    
T  13479665 ttgttgttgacacatttcataaggctgaggcacacaagtaaaatacgcttttgccccctcggtagttaactgtcggggaattcaaaaaccagctgcagtt 13479764  T
Q  309 aactgctgag 318  Q
    ||||||||||    
T  13479765 aactgctgag 13479774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 12783969 - 12783906
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| |||||||||||||||||||||||| |  |||||||||||||||||||||||||    
T  12783969 agttaactgccgaggatcttctgctacaaatctggaaaaagctctctcatccattattcatctc 12783906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 32034411 - 32034341
Alignment:
Q  298 cggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||||| || |||||||||||||||||||||||| || ||||| ||||||||||| ||||    
T  32034411 cggctgcagttaactgccgatgatcttctgctacaaatctggcagaagatctcttatccattattcgtctc 32034341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 29065791 - 29065852
Alignment:
Q  307 ttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  29065791 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29065852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 29074804 - 29074865
Alignment:
Q  307 ttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  29074804 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29074865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 29079568 - 29079629
Alignment:
Q  307 ttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  29079568 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29079629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 29107377 - 29107438
Alignment:
Q  307 ttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  29107377 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29107438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 13401547 - 13401610
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||| | |||||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  13401547 agttaactaccgaggatcttctgctacaaatatgacagaagctctctcatccattattcatctc 13401610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 320
Target Start/End: Complemental strand, 35021394 - 35021286
Alignment:
Q  212 ttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaac 311  Q
    ||||||||||||||||||  ||||||  |||| | ||||||||  |||||| || | || |||||| ||| || ||||||||||| ||||||||||||||    
T  35021394 ttgttgacacattttatatggctgagaaacacgagtaaaatacacttttgccccctcggcagttaaatgcggaagaattcaaaaaccggctgcagttaac 35021295  T
Q  312 tgctgagga 320  Q
    ||| |||||    
T  35021294 tgccgagga 35021286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 13401429 - 13401536
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    |||||||||||||||||| | ||||  |||| | | ||||| | |||||| || | || |||||| ||| |||||||| |||||||||||||||||||||    
T  13401429 tgttgacacattttataaggttgagtaacacgagttaaatatgcttttgccccctcggcagttaactgccgaggaattaaaaaatcggctgcagttaact 13401528  T
Q  313 gctgagga 320  Q
    ||| ||||    
T  13401529 gctaagga 13401536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 23986097 - 23986010
Alignment:
Q  227 ataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    |||| ||||||  |||||| |||||||||||||||| || |||| |||||| ||| ||| |||||||||| ||| |||||||||||||    
T  23986097 ataaggctgagacacacaagtaaaatacgtttttgcccccttggcagttaactgccgagaaattcaaaaaccggttgcagttaactgc 23986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 18001153 - 18001257
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| | |||||||||||| ||||||| ||   ||| | || || |||||| || ||||||||| ||||| |||||||||||    
T  18001153 ttgttgttgacacatttcataaggttgaggtacacaagtaaaatatgtaaatgccctatcggcagttaactgttgaggaatt-aaaaaccggctgcagtt 18001251  T
Q  309 aactgc 314  Q
    ||||||    
T  18001252 aactgc 18001257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 32026044 - 32026096
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttg 261  Q
    ||||||||||||||||| |||| ||||||| |||||| |||||||||||||||    
T  32026044 ttgttgttgacacatttcataaggctgaggcacacaagtaaaatacgtttttg 32026096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 18605984 - 18606094
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    |||||||||||||||| ||| | ||||||| |||| | |||||||||||||||| || | ||||||||| |||  |||||||   | | |||||||||||    
T  18605984 ttgttgttgacacattgtatgaggctgaggcacacgagtaaaatacgtttttgccccctcggtagttaactgcctaggaatt-tgacaccggctgcagtt 18606082  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  18606083 aactgccgagga 18606094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 23958829 - 23958940
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||| | |||| ||||||  || ||| |||||||||||||||  || | || |||||| ||| ||| ||||| |||| |||||||||||    
T  23958829 ttgttgttgacacatatgataaggctgagacacccaactaaaatacgtttttgtcccctcggcagttaactgccgagaaattccaaaaccggctgcagtt 23958928  T
Q  309 aactgctgagga 320  Q
    || ||| |||||    
T  23958929 aaatgccgagga 23958940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 29286168 - 29286279
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| | ||||| |||||| |||  ||||||||||| || | ||||||||| ||| |||||| | | ||| ||| |||||||    
T  29286168 ttgttgttgacacattgcataaggttgaggcacacaagtaatttacgtttttgccccctcggtagttaactgccgaggaaataagaaaccggttgcagtt 29286267  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  29286268 aactgccgagga 29286279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 12784073 - 12783991
Alignment:
Q  227 ataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtta 309  Q
    |||| ||||||| |||||| ||||||||| |||||| |||| || |||||| ||| || |||||||| || ||||||||||||    
T  12784073 ataaggctgaggcacacaagtaaaatacgcttttgccccatcggcagttaactgccgatgaattcaataaccggctgcagtta 12783991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 13404771 - 13404661
Alignment:
Q  204 aagatttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctg 303  Q
    |||| |||||||| |||||||  |||| || |||| |||||| |||||||||  ||||| || | ||||||||| ||  ||||||||||| || | ||||    
T  13404771 aagaattgttgttaacacattgcataaggccgaggcacacaagtaaaatacgcgtttgccccctcggtagttaactgtcgaggaattcaataacctgctg 13404672  T
Q  304 cagttaactgc 314  Q
    |||||||||||    
T  13404671 cagttaactgc 13404661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 26855976 - 26856013
Alignment:
Q  325 ctgctacaaatctggcaggagctctctcatccattatt 362  Q
    |||||||||||||||||| |||||||||||||||||||    
T  26855976 ctgctacaaatctggcagaagctctctcatccattatt 26856013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 17596808 - 17596765
Alignment:
Q  325 ctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||    
T  17596808 ctgctataaatctggcagaagctatctcatccattattcatctc 17596765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 7537180 - 7537240
Alignment:
Q  252 tacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||| || | || |||||||||  |||||||| ||||| |||||||||||||||    
T  7537180 tacgtttttgccccctcggcagttaattgtcgaggaattaaaaaaccggctgcagttaact 7537240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 2920528 - 2920465
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2920528 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 2920465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 24512228 - 24512291
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24512228 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 24512291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 41500246 - 41500184
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatct 367  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  41500246 agttaactgccgaggatcttctgctacaaatctggcataagctctctcatccattattcatct 41500184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 2917622 - 2917733
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||| |||| ||||||| ||| || |||||||||||||||| || | || |||||| ||| ||| |||| ||||| ||||| |||||    
T  2917622 ttgttgttgacacatttcataaggctgaggcacaaaagtaaaatacgtttttgccccctcggcagttaactgccgagaaattgaaaaaccggctacagtt 2917721  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  2917722 aactgccgagga 2917733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 19186686 - 19186797
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||| | |||| ||||||  |||||| |||||||||||||| | |||| || ||| || ||| ||| |||||||||| |||||||||||    
T  19186686 ttgttgttgacacatatcataaggctgagacacacaagtaaaatacgtttttaccccatcggcagtaaactgccgagcaattcaaaaagcggctgcagtt 19186785  T
Q  309 aactgctgagga 320  Q
    ||||||| ||||    
T  19186786 aactgctaagga 19186797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 40679608 - 40679546
Alignment:
Q  306 gttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||| |||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  40679608 gttaactgccgaggatcttctgctacaaatctggaagaacctctctcatccattattcatctc 40679546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 29093842 - 29093780
Alignment:
Q  303 gcagttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||   ||||||||||||    
T  29093842 gcagttaactgccgaggatcttctgctacaaatctggcagaagctctctca---attattcatctc 29093780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 35493475 - 35493364
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||  |||| | ||||  |||| | ||||||||| |||||| || | ||||||||| ||| |||||||||||||| | |||||||||    
T  35493475 ttgttgttgacacattgcataaggttgagacacacgagtaaaatacgcttttgccccctcggtagttaactgccgaggaattcaaaaaccagctgcagtt 35493376  T
Q  309 aactgctgagga 320  Q
    |||||| |||||    
T  35493375 aactgccgagga 35493364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 43491170 - 43491233
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||| ||| |||||||| || ||||||||||| |||||||||||||||||||||||||    
T  43491170 agttaactgccgagaatcttctgttataaatctggcagaagctctctcatccattattcatctc 43491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 45475383 - 45475490
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||| |||| ||||||  |||||| ||||||||| |||||| || | || |||||| ||| ||| |||||||||| ||||| |||||||||    
T  45475383 tgttgacacatttcataaggctgagacacacaagtaaaatacgattttgccccctcggcagttaactgccgagaaattcaaaaaccggctacagttaact 45475482  T
Q  313 gctgagga 320  Q
    || |||||    
T  45475483 gccgagga 45475490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 34921886 - 34921782
Alignment:
Q  215 ttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    ||||||||||| |||| || |||  |||| | |||||||||||||||| ||   ||||||||| ||| ||| |||||||||| |||||||||||||||||    
T  34921886 ttgacacatttcataaggcagagaaacacgagtaaaatacgtttttgcccccc-ggtagttaactgccgagaaattcaaaaaccggctgcagttaactgc 34921788  T
Q  315 tgagga 320  Q
    ||||||    
T  34921787 tgagga 34921782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 2648178 - 2648241
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||| ||| || |||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  2648178 agttaattgccgatgatcttctgctacaaatctggcagaaactctctcatcaattattcatctc 2648241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 39393098 - 39393161
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||  ||||||||||| |||||||||||  || |||||||||||||||||||||||||    
T  39393098 agttaactgtcgaggatcttctactacaaatctgatagaagctctctcatccattattcatctc 39393161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 41181380 - 41181487
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||  |||| ||||||| |||| | |||||||||||||||| || | || |||||| ||| ||||||||||| || ||||| || ||||||    
T  41181380 tgttgacacattgcataaggctgaggcacacgagtaaaatacgtttttgccccctcggcagttaactgccgaggaattcaataaccggctacatttaact 41181479  T
Q  313 gctgagga 320  Q
    || |||||    
T  41181480 gccgagga 41181487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 10365804 - 10365746
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattc 363  Q
    |||||| ||| ||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  10365804 agttaaatgccgaggatcttttgctacaaatctggcataagctctctcatccattattc 10365746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 28472141 - 28472214
Alignment:
Q  298 cggctgcagttaactgctgaggatcttctg--ctac-aaatctggcaggagct-ctctcatccattattcatct 367  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||| | || ||||||||||||||||||||    
T  28472141 cggctgcagttaactgctgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattcatct 28472214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 8268883 - 8268780
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtt 308  Q
    ||||||||||||||||||||||  |||| |||||  | ||||||||| |||||  || | || |||||| || | |||||| ||||||||||||||| ||    
T  8268883 ttgttgttgacacattttataagactgacgtacattagtaaaatacgattttgtcccctcggcagttaactgttaaggaatgcaaaaatcggctgcaatt 8268784  T
Q  309 aact 312  Q
    ||||    
T  8268783 aact 8268780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 16580559 - 16580610
Alignment:
Q  317 aggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||| |||||||||||||||||||  || ||||||||||||||||||||||    
T  16580559 aggattttctgctacaaatctggcaaaagttctctcatccattattcatctc 16580610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 43493373 - 43493286
Alignment:
Q  227 ataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    |||| ||||||  |||||| |||||||||||||||| || | || |||||| |||| ||||||| ||||||||||||||  |||||||    
T  43493373 ataaggctgagacacacaagtaaaatacgtttttgccccctcggcagttaactgctaaggaattaaaaaatcggctgcaaataactgc 43493286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 45137529 - 45137462
Alignment:
Q  247 taaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    ||||||||| ||||||  | |||| |||||||||| |||||||| |||| ||||||||||||||||||    
T  45137529 taaaatacgattttgcctccttggcagttaattgccgaggaattaaaaattcggctgcagttaactgc 45137462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 26858175 - 26858237
Alignment:
Q  306 gttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||| |||||||||||||||||||| || ||| |  ||||||||| ||||||||||||    
T  26858175 gttaactgccgaggatcttctgctacaaatgtgacagaaattctctcatcaattattcatctc 26858237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 34638212 - 34638261
Alignment:
Q  316 gaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    ||||||||||||||||||||||   || |||||||||||||||||||||||||    
T  34638212 gaggatcttctgctacaaatct---agaagctctctcatccattattcatctc 34638261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 36255019 - 36255061
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgc 314  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  36255019 agttaattgccgaggaatttaaaaatcggctgcagttaactgc 36255061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 43950374 - 43950265
Alignment:
Q  210 tgttgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagtta 309  Q
    |||||||||||||||| |||| ||||||  |||| | |||||||| ||||||| || | || |||||| ||||| ||||||| |||| || ||||| |||    
T  43950374 tgttgttgacacatttgataaggctgagaaacacgagtaaaatacatttttgccccctcggcagttaactgctgtggaattc-aaaaccgactgcaatta 43950276  T
Q  310 actgctgagga 320  Q
    ||||| |||||    
T  43950275 actgccgagga 43950265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 23409572 - 23409524
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||| ||||||||||||||  |||||||||||||||| |||||    
T  23409572 agttaattgccgaggaattcaaaaactggctgcagttaactgccgagga 23409524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 320
Target Start/End: Complemental strand, 9660185 - 9660078
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||  ||||||||||||||||| | |||  ||| ||||||| |  | || |||||| ||| ||||||| ||| || ||||||||||| |||    
T  9660185 tgttgacacattgcataaagctgaggtacacgagtaatttacttttttgccctctcggcagttaactgccgaggaatacaataaccggctgcagttgact 9660086  T
Q  313 gctgagga 320  Q
    || |||||    
T  9660085 gccgagga 9660078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 12905492 - 12905593
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||| |||| ||||||  |||  | ||||||||| ||||   || | || |||||| ||| ||| |||| |||||||||||||||||||||    
T  12905492 tgttgacacatttcataaggctgagaaacaagagtaaaatacgcttttttcccctcggcagttaactgccgagaaattgaaaaatcggctgcagttaact 12905591  T
Q  313 gc 314  Q
    ||    
T  12905592 gc 12905593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 35490683 - 35490727
Alignment:
Q  273 gttaattgctgaggaattcaaaaatcggctgcagttaactgctga 317  Q
    ||||| ||| || ||||||||||| ||||||||||||||||||||    
T  35490683 gttaactgccgaagaattcaaaaaccggctgcagttaactgctga 35490727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 804 - 920
Alignment:
Q  252 tacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgaggatcttctgctacaaatctggcaggagctctct 351  Q
    ||||||||||| || | |||| |||| ||| || |||||  |||  ||||||||||||||||| ||||||||||  ||||||||||||||| ||||||||    
T  804 tacgtttttgccccttcggtaattaactgccgaagaattagaaatccggctgcagttaactgccgaggatcttcctctacaaatctggcagaagctctct 903  T
Q  352 catccattattcatctc 368  Q
     ||||||||||||||||    
T  904 tatccattattcatctc 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 11840 - 11735
Alignment:
Q  213 tgttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaact 312  Q
    ||||||||||||||||||   |||| ||||||| ||||||||  |||||| || | || |||||| |||||| ||||||||||| |||||||||||||||    
T  11840 tgttgacacattttataagattgagatacacaagtaaaatacacttttgccccttcggcagttaactgctgaagaattcaaaaaccggctgcagttaact 11741  T
Q  313 gctgag 318  Q
    ||||||    
T  11740 gctgag 11735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 18911 - 18848
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagctctctcatccattattcatctc 368  Q
    |||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  18911 agttaactgtcgaggatcttctgctacaaatctggcagaagctttctcatccattattcatctc 18848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 12400 - 12336
Alignment:
Q  305 agttaactgctgaggatcttctgctacaaatctggcaggagct-ctctcatccattattcatctc 368  Q
    |||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  12400 agttaactgccgaggatcttctgctacaaatctggcagaatctactctcatccattattcatctc 12336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 3898 - 3935
Alignment:
Q  283 gaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3898 gaggaattcaaaaatcggctgcagttaactgccgagga 3935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 7433 - 7333
Alignment:
Q  214 gttgacacattttataaagctgaggtacacaaataaaatacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactg 313  Q
    ||||||| |||| |||| | ||||| |||  | ||||||| ||||||||  | |||  ||||||||||||||||||||||||| |||||||| | |||||    
T  7433 gttgacaaatttcataaggttgaggcacatgagtaaaatatgtttttgcctccttgacagttaattgctgaggaattcaaaaaccggctgcaatcaactg 7334  T
Q  314 c 314  Q
    |    
T  7333 c 7333  T

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Target: scaffold0188 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 27382 - 27433
Alignment:
Q  209 ttgttgttgacacattttataaagctgaggtacacaaataaaatacgttttt 260  Q
    ||||||||||||||||| |||||| | ||| |||||| ||||||||||||||    
T  27382 ttgttgttgacacatttcataaagttaaggcacacaagtaaaatacgttttt 27433  T

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Target: scaffold0219 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 20183 - 20142
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactg 313  Q
    |||||| ||| |||||||||||||||||||| ||||||||||    
T  20183 agttaactgccgaggaattcaaaaatcggctacagttaactg 20142  T

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Target: scaffold0219; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 15685 - 15753
Alignment:
Q  252 tacgtttttgctccattggtagttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||||  |||||  |||||| ||  |||||||||||||| ||| ||||||||||||| |||||    
T  15685 tacgtttttgcctcattgacagttaactgtcgaggaattcaaaaaccggttgcagttaactgccgagga 15753  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 1717 - 1680
Alignment:
Q  283 gaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||||||||||| || ||||||||||||||||||||    
T  1717 gaggaattcaaaaaccgactgcagttaactgctgagga 1680  T

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Target: scaffold0201 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 22405 - 22453
Alignment:
Q  272 agttaattgctgaggaattcaaaaatcggctgcagttaactgctgagga 320  Q
    |||||| ||| ||||||||  ||| ||||||||||||||||||||||||    
T  22405 agttaactgccgaggaatttgaaattcggctgcagttaactgctgagga 22453  T

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