View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_5 (Length: 369)
Name: NF10860_low_5
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 42956323 - 42956093
Alignment:
| Q |
15 |
aaaaacatattgatgaacgactgcattttatcagagacatatttgtatgacggttacttgaagtgaagaaagttgttggtgaagacaatcgagctaactt |
114 |
Q |
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| T |
42956323 |
aaaaacatattgatgaaagacagcattttatcagagacatatttgtatgacggttacttgaagtgaagaaagttgtcggtgaagacaatcgagctaactt |
42956224 |
T |
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| Q |
115 |
gttaaccaaggtggttcctagatccaattttttgcattgcttgaccggtaaatctagatacctgcgagagttgaattctcaaaagttgtgaacactttag |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42956223 |
gttaaccaaggtggttcccagatccaattttttgcattgcttgaccggtaaatctagatacctgcgagagttgaattctcaaaagttgtgaacactttag |
42956124 |
T |
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| Q |
215 |
gctatcactatcttaattcattgtgtttcag |
245 |
Q |
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| T |
42956123 |
gctatcactatcttaattcattgtgtttcag |
42956093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 42956095 - 42956009
Alignment:
| Q |
272 |
caggatcattaattgtgtttacaatttaccaagttagtttttgcttatgttttttataaaagctgttgcgataacatctttgttcat |
358 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42956095 |
caggatcactaattgtgtttacaatttaccaagttagattttgcctatgttttttataaaagctgttgcgataacatctttgttcat |
42956009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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